rs235902109 SNP Detail

Summary

• ID
  rs235902109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:26339338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCTTCAT TGTTTCAGTA
  CAATTTTACA AATATATTTC AATATTACTA ACCAGGCTTC ATGTAGTACC TTAGATATTT
  AGACGAATTT ACTGTTTACC CACAATTTTT CAAAAGAATA AACAAAAATC CAAATCATTA
  AGGAATTTTT TTCCTGAAAT TCTCAAGAGA ATATACTATT ATCTCTGAGA TTGCTGCATG
  Y
  GTGTCACCAA AAAGAAAGCT TGAAATTGCT TGGCTAAACA AGCCAAAAGG CAGCCAGCGG
  CTAGTCAATG TCCCAGAGAG TAGAACTCCT CAAGGTCTCA CATGAAGCAA TGAGGGCGTT
  CAGAACATTC ATCTACTGAC CACCTCTGGT GGTCTCTCGC ATTCTCTGTC AGTTGACTGC
  AGTCAATAAG TTTCCCCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374011520	MGP_WTSI_8_26959782	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235902109					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374011520	MGP_WTSI_8_26959782	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26339338 () rs orientation: forward

Symbol	Name	Function Class
Ash2l	ASH2 like histone lysine methyltransferase complex subunit	1616 bp upstream
Kcnu1	potassium channel, subfamily U, member 1	Intron
Rr661222	regulatory region 661222	1627 bp distal
Rr661223	regulatory region 661223	1424 bp distal
Rr661224	regulatory region 661224	621 bp distal
Tssr76727	transcription start site region 76727	300 bp upstream
Tssr76728	transcription start site region 76728	308 bp upstream
Tssr76729	transcription start site region 76729	328 bp upstream
Tssr76730	transcription start site region 76730	350 bp upstream
Tssr76731	transcription start site region 76731	362 bp upstream
Tssr80738	transcription start site region 80738	1634 bp upstream
Tssr80739	transcription start site region 80739	1612 bp upstream
Tssr80740	transcription start site region 80740	1594 bp upstream