rs235906176 SNP Detail

Summary

• ID
  rs235906176
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23942732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGCCACT CAACATCCCA
  GCAGAATTAG AATTTTGCTC AAGTAATTCT GAGTTACCAT ACTAGTCACA ATAAATAGTG
  CTGCCTTAAA AAACACAGTT CTCATTTCAA ATAGAATTAA GAGATGTTTT ACTTGAGAGC
  TAAATATGAA TGCTCATGGC CTAGGAACAC AAATTCAGAT TCTTCCAAGT ACTGTAGTTT
  R
  CTTTGGGAGT GTTCCATGAC ATTTTACTAG TTATACTTGA CTTTTTTTAA TATTATTGTT
  TTAGATGGTT TGCCTACATG TATTTCTGTG CCTCTTTTAT GATTGGTACT CAGAGACCAG
  CAGTGGGAAC TGGGACTCCT GGGACTGCAG TTACAAGAGA TTTTGAGACA CCATGTGGGT
  GCGGGTGCGG GTGCGGGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324291482	CHEV_13_23850618	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235906176					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23942732 () rs orientation: forward

Symbol	Name	Function Class
4930558J22Rik	RIKEN cDNA 4930558J22 gene	1111 bp upstream
Cpgi5375	CpG island 5375	1252 bp distal
Cpgi5376	CpG island 5376	1930 bp proximal
H4c2	H4 clustered histone 2	1340 bp downstream
Rr388131	regulatory region 388131	891 bp downstream
Rr388132	regulatory region 388132	1047 bp upstream
Rr475943	regulatory region 475943	1726 bp distal
Rr475944	regulatory region 475944	621 bp distal
Tssr118864	transcription start site region 118864	1754 bp downstream
Tssr121748	transcription start site region 121748	1120 bp upstream