rs235909227 SNP Detail

Summary

• ID
  rs235909227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127921152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTACAGAT TTGCTCCTAT
  TCATGCTGAG GCTCCTGAGT TCATAGAGAT GAGTGTTGAG CAGGAGATTC TGGTGACTGG
  GATAAAGGTT GTGGATCTGC TGGCCCCATA CGCCAAGGGT GGGAAAATCG GTACGTTGGT
  TTTTGGTCCG TGTTTTCCAA ATACAGTAAA GCATGGAGAC CCTTTTTTCT TTTGAGAGTG
  Y
  TTGAGCCTTC AGTGATGATT AGCTTCTGAC TTTCGTTCTT CTGAATTTGC TGAAGCCAGA
  TGCCGTTCCT GAGAAGGGGA AAATGGACAG AACTGAACAT TTTTGAAGGC TGTTTAATTT
  GGGAATGCAG AGATCTGAAA TATTTCTTCT TAAACTAGGA CTCTTTGGAG GTGCTGGCGT
  TGGAAAGACA GTACTGATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382197818	MGP_WTSI_10_127522339	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235909227					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382197818	MGP_WTSI_10_127522339	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127921152 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1b	ATP synthase F1 subunit beta	within coordinates
Cpgi2382	CpG island 2382	1136 bp distal
Gm55458	predicted gene, 55458	6 bp upstream
Mir677	microRNA 677	3 bp upstream
Rr402340	regulatory region 402340	1971 bp downstream
Rr441097	regulatory region 441097	2000 bp distal
Rr441098	regulatory region 441098	1186 bp proximal
Rr441099	regulatory region 441099	1286 bp proximal
Snord59a	small nucleolar RNA, C/D box 59A	1067 bp downstream
Tssr96319	transcription start site region 96319	1974 bp downstream
Tssr96320	transcription start site region 96320	1345 bp downstream
Tssr96321	transcription start site region 96321	1298 bp downstream
Tssr96322	transcription start site region 96322	227 bp upstream
Tssr96323	transcription start site region 96323	748 bp upstream
Tssr96324	transcription start site region 96324	849 bp upstream
Tssr96325	transcription start site region 96325	1009 bp upstream
Tssr96326	transcription start site region 96326	1026 bp upstream
Tssr96327	transcription start site region 96327	1042 bp upstream
Tssr96328	transcription start site region 96328	1089 bp upstream