rs235916995 SNP Detail

Summary

• ID
  rs235916995
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179983692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGCACAC AGAAGTATCG
  AGCACCTCCT GAACCTCATG GGAGGTGAAG GTGTGTGGTG GCACAGGGAG GTAAACGCAG
  GTGTCATGGT GGGGAGGGCT GTGGGGAGAG GGACAGGGAG TTTTGCCTTT TTAGACTGTA
  GGGGTCTTTG TGAGGCAGAG AAGCCCACCC ATTCCTGTAC CTTGCTTGGG GAATGCCTCC
  R
  TGCTGTTGCT TAGGCTAGTT TGCAAACAGG CAGTCATGAT AGGTGCTCCA CTTTGCTTTA
  AAAACTGGAA AGGTTTATGA GAAAATAAAA ATATCAAAAC CAAGGACTGT GAGATCCCTA
  GCACTTGGGA GGTGGCAGAG GAAGGACCGG AAGTTTGAGA TCATCCTGGG CTTCTTGGAA
  AAGTCAATGC TAGTTTCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320631877	CHEV_2_180076604	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235916995					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179983692 () rs orientation: forward

Symbol	Name	Function Class
Gata5os	GATA binding protein 5, opposite strand	1167 bp downstream
Gm52543	predicted gene, 52543	within coordinates
Gm75553	predicted gene, 75553	within coordinates
Rr572718	regulatory region 572718	1455 bp distal
Rr572719	regulatory region 572719	103 bp distal
Rr572720	regulatory region 572720	1079 bp proximal