rs235919143 SNP Detail

Summary

• ID
  rs235919143
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103269976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCAATGA AGAAACTTTT
  GGTGAAGGAA AAGGACTTGA CTTTTTAAAA AGTTGACGAT GTGATGTGGC AATGTCAAAA
  GGATGAACCC TGACCTTCCT TTGAGGATCC CTACCAATAT TCCGCATGAG CTACACTACC
  ATTGTAAGTT TACATACAGC TCAAATTATC ATAACACGCC TTACTTCTAT TCTGCCTGCT
  W
  CCAGTACAAA AAGCATTGCT GCATAGACTA TTTAGAGGGT AAATTTGTTT TTAAATAAGC
  AAAAGTCCGT TTTATTCTCT TTTTATCAAG TATCCAGCTG CAGATAATCC TTTAACCATT
  GATAGTTAAC TAGGACTCAG TCTGCAGATA ATCCCTCAAC CATCCATAGT TAACTAGGAC
  TCAACACCAC ACTATTGCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392295485	MGP_WTSI_14_103431757	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235919143					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392295485	MGP_WTSI_14_103431757	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103269976 () rs orientation: forward

Symbol	Name	Function Class
4933432I03Rik	RIKEN cDNA 4933432I03 gene	within coordinates
Rr404263	regulatory region 404263	872 bp upstream
Rr404264	regulatory region 404264	1591 bp upstream
Rr496958	regulatory region 496958	599 bp proximal
Rr496959	regulatory region 496959	972 bp proximal
Rr496960	regulatory region 496960	1635 bp proximal
Tssr4511	transcription start site region 4511	1181 bp upstream
Tssr126967	transcription start site region 126967	1213 bp upstream
Tssr126968	transcription start site region 126968	1298 bp upstream
Tssr130069	transcription start site region 130069	950 bp downstream
Tssr130070	transcription start site region 130070	976 bp downstream