rs235923690 SNP Detail

Summary

• ID
  rs235923690
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156079848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTAGCCC CTTGTGTGTG
  GATCTTGTTT GGAGATAGGA TCTTACTGTT TATCCATGGC TGGCTTGGAG CTCACAGTGT
  GGACCAGACT GGCCTTGAAC TCAGAGATCC ACCCATGTCC ACCTCCTGTG TGCTGGGATT
  AAAGTTGAAT GTCACCATAT CCTGCTGGAA TATATGGTTG GTCCTGATTA TTAAATCATG
  K
  TATGAAATAA ATATATTTAG TGAAGCATTT GCTTCCACTT AACTGTGGTG GTCTGTCTTT
  TTTTTTTTTT TTTTTTTTTT TCTCTCCCTG AGACAATACT TCTCTGTGTA GCCCTGGTTA
  TCACCCAAGT GCTGGGATTA AAGGTTGATA GTGAGAATTT GGAATTTTGG TTGCTTTAAA
  AATCACAAAT ATTATAAGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444410	CHEV_4_155369500	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235923690					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156079848 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15496	CpG island 15496	1554 bp distal
Rr100725	regulatory region 100725	847 bp distal
Rr377473	regulatory region 377473	1018 bp downstream
Sdf4	stromal cell derived factor 4	within coordinates
Tssr40752	transcription start site region 40752	1936 bp downstream
Tssr40753	transcription start site region 40753	948 bp upstream