rs235926254 SNP Detail

Summary

• ID
  rs235926254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41490344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAATGCT TCAGGAATCA
  GGAAAATGCC TGCCGCGGAA GCCAAGGGTT TGGCTGAGCG GAGGAGACTG AGTGAGTGGC
  TTTCCAAATC CCAGGACCAT AAGTGGCAAA TTAGTGCACA TTGCAACCGG AGGCAACCGG
  CAAAACTCGG CCATTCAAAG GCAAGAGTTT TAGCATCATG GTCATTGTGT GCCTGAAGAG
  Y
  GTCTATGTAT CTTAAATATA GACTTGAGTT GTTGCTCTTT TATGCTTTCA CACACAAATT
  TCAAAGAAAT GTTTGGGGTG TTGTTGACTA TCTGCCCATT TAAAAAAAAA AAGAAGAACA
  GGAGAATTTC ACAAGCAGCC TCACCTGTGC TCATCCGCAC TCGTGTGTGG ATGCCAAACA
  ATTGGCCAAA GAACCACACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377342601	MGP_WTSI_9_41387131	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235926254					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377342601	MGP_WTSI_9_41387131	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41490344 () rs orientation: forward

Symbol	Name	Function Class
Gm51670	predicted gene, 51670	within coordinates
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677060	regulatory region 677060	within coordinates
Rr677061	regulatory region 677061	460 bp proximal
Rr677062	regulatory region 677062	1201 bp proximal
Tssr84512	transcription start site region 84512	612 bp upstream
Tssr84513	transcription start site region 84513	640 bp upstream
Tssr84514	transcription start site region 84514	802 bp upstream
Tssr84515	transcription start site region 84515	887 bp upstream
Tssr84516	transcription start site region 84516	922 bp upstream
Tssr84517	transcription start site region 84517	955 bp upstream
Tssr84518	transcription start site region 84518	1655 bp upstream
Tssr84519	transcription start site region 84519	1703 bp upstream
Tssr84520	transcription start site region 84520	1855 bp upstream
Tssr84521	transcription start site region 84521	1896 bp upstream
Tssr84522	transcription start site region 84522	1920 bp upstream
Tssr88995	transcription start site region 88995	464 bp downstream
Tssr88996	transcription start site region 88996	498 bp downstream
Tssr88997	transcription start site region 88997	1738 bp downstream