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rs235939370 SNP Detail
Summary
  • ID
    rs235939370
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:44127859 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCACTCTTGT CCTCCTCCAT
CTCCTTTGTT TTCATCTCCA TCTTTTTCAG TATCTTCCTC TATGTCTTCC TTCTTCTCAC
CATCTCCTCT CCAATCTCCT CCATCTTTCC CTCTTTCATC TCATTGCCCT GCTCCTCCAA
CACGTCTCCT TTTCCTTAAT CACTTTCTTC ATCTACACCT ACCTCTGCCT GCATCTCTTT
R
CTCTCTACTC ATCTCCTTCT ACTGTCTTAC CCCCCACTTA CTCATCTCAG CTCTCTATCC
TCCCTCCTTT GTATCTTCCC TACCCACATC TCTTCCATCC CCCCTCTTCT GCCTTCCTTT
CCTGCCTCCT CTTTCATATC TCACACCTCT ACCTCAGCCC CTGCCCTTCC CTTCTTTATC
TTCACCTCAC TTGTCTCCTC                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156103 MGP_WTSI_7_51733805 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235939370 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156103 MGP_WTSI_7_51733805 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44127859 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2223 transcription start site region 2223 1902 bp downstream
Tssr2224 transcription start site region 2224 1056 bp downstream
Tssr2225 transcription start site region 2225 1016 bp downstream
Tssr2226 transcription start site region 2226 490 bp downstream
Tssr2227 transcription start site region 2227 576 bp upstream
Tssr2228 transcription start site region 2228 1643 bp upstream
Tssr2229 transcription start site region 2229 1919 bp upstream
Tssr66216 transcription start site region 66216 1986 bp downstream
Tssr66217 transcription start site region 66217 1914 bp downstream
Tssr66218 transcription start site region 66218 1860 bp downstream
Tssr66219 transcription start site region 66219 1818 bp downstream
Tssr66220 transcription start site region 66220 1784 bp downstream
Tssr66221 transcription start site region 66221 1765 bp downstream
Tssr66222 transcription start site region 66222 1712 bp downstream
Tssr66223 transcription start site region 66223 1645 bp downstream
Tssr66224 transcription start site region 66224 1622 bp downstream
Tssr66225 transcription start site region 66225 1602 bp downstream
Tssr66226 transcription start site region 66226 1589 bp downstream
Tssr66227 transcription start site region 66227 1548 bp downstream
Tssr66228 transcription start site region 66228 1545 bp downstream
Tssr66229 transcription start site region 66229 1532 bp downstream
Tssr66230 transcription start site region 66230 1512 bp downstream
Tssr66231 transcription start site region 66231 1477 bp downstream
Tssr66232 transcription start site region 66232 1465 bp downstream
Tssr66233 transcription start site region 66233 1443 bp downstream
Tssr66234 transcription start site region 66234 1413 bp downstream
Tssr66235 transcription start site region 66235 1393 bp downstream
Tssr66236 transcription start site region 66236 1366 bp downstream
Tssr66237 transcription start site region 66237 1345 bp downstream
Tssr66238 transcription start site region 66238 1326 bp downstream
Tssr66239 transcription start site region 66239 1275 bp downstream
Tssr66240 transcription start site region 66240 1194 bp downstream
Tssr66241 transcription start site region 66241 1182 bp downstream
Tssr66242 transcription start site region 66242 1102 bp downstream
Tssr66243 transcription start site region 66243 1088 bp downstream
Tssr66244 transcription start site region 66244 1037 bp downstream
Tssr66245 transcription start site region 66245 975 bp downstream
Tssr66246 transcription start site region 66246 947 bp downstream
Tssr66247 transcription start site region 66247 900 bp downstream
Tssr66248 transcription start site region 66248 859 bp downstream
Tssr66249 transcription start site region 66249 836 bp downstream
Tssr66250 transcription start site region 66250 817 bp downstream
Tssr66251 transcription start site region 66251 792 bp downstream
Tssr66252 transcription start site region 66252 761 bp downstream
Tssr66253 transcription start site region 66253 733 bp downstream
Tssr66254 transcription start site region 66254 685 bp downstream
Tssr66255 transcription start site region 66255 658 bp downstream
Tssr66256 transcription start site region 66256 609 bp downstream
Tssr66257 transcription start site region 66257 598 bp downstream
Tssr66258 transcription start site region 66258 555 bp downstream
Tssr66259 transcription start site region 66259 519 bp downstream
Tssr66260 transcription start site region 66260 412 bp downstream
Tssr66261 transcription start site region 66261 391 bp downstream
Tssr66262 transcription start site region 66262 384 bp downstream
Tssr66263 transcription start site region 66263 372 bp downstream
Tssr66264 transcription start site region 66264 348 bp downstream
Tssr66265 transcription start site region 66265 305 bp downstream
Tssr66266 transcription start site region 66266 288 bp downstream
Tssr66267 transcription start site region 66267 251 bp downstream
Tssr66268 transcription start site region 66268 235 bp downstream
Tssr66269 transcription start site region 66269 199 bp downstream
Tssr66270 transcription start site region 66270 164 bp downstream
Tssr66271 transcription start site region 66271 132 bp downstream
Tssr66272 transcription start site region 66272 80 bp downstream
Tssr66273 transcription start site region 66273 62 bp downstream
Tssr66274 transcription start site region 66274 57 bp downstream
Tssr66275 transcription start site region 66275 37 bp downstream
Tssr66276 transcription start site region 66276 17 bp downstream
Tssr66277 transcription start site region 66277 within coordinates
Tssr66278 transcription start site region 66278 17 bp upstream
Tssr66279 transcription start site region 66279 64 bp upstream
Tssr66280 transcription start site region 66280 103 bp upstream
Tssr66281 transcription start site region 66281 134 bp upstream
Tssr66282 transcription start site region 66282 160 bp upstream
Tssr66283 transcription start site region 66283 174 bp upstream
Tssr66284 transcription start site region 66284 191 bp upstream
Tssr66285 transcription start site region 66285 206 bp upstream
Tssr66286 transcription start site region 66286 243 bp upstream
Tssr66287 transcription start site region 66287 261 bp upstream
Tssr66288 transcription start site region 66288 297 bp upstream
Tssr66289 transcription start site region 66289 345 bp upstream
Tssr66290 transcription start site region 66290 406 bp upstream
Tssr66291 transcription start site region 66291 435 bp upstream
Tssr66292 transcription start site region 66292 473 bp upstream
Tssr66293 transcription start site region 66293 491 bp upstream
Tssr66294 transcription start site region 66294 512 bp upstream
Tssr66295 transcription start site region 66295 797 bp upstream
Tssr66296 transcription start site region 66296 930 bp upstream
Tssr66297 transcription start site region 66297 973 bp upstream
Tssr66298 transcription start site region 66298 998 bp upstream
Tssr66299 transcription start site region 66299 1067 bp upstream
Tssr66300 transcription start site region 66300 1074 bp upstream
Tssr66301 transcription start site region 66301 1098 bp upstream
Tssr66302 transcription start site region 66302 1112 bp upstream
Tssr66303 transcription start site region 66303 1153 bp upstream
Tssr66304 transcription start site region 66304 1161 bp upstream
Tssr66305 transcription start site region 66305 1171 bp upstream
Tssr66306 transcription start site region 66306 1205 bp upstream
Tssr66307 transcription start site region 66307 1262 bp upstream
Tssr66308 transcription start site region 66308 1315 bp upstream
Tssr66309 transcription start site region 66309 1336 bp upstream
Tssr66310 transcription start site region 66310 1374 bp upstream
Tssr66311 transcription start site region 66311 1451 bp upstream
Tssr66312 transcription start site region 66312 1467 bp upstream
Tssr66313 transcription start site region 66313 1488 bp upstream
Tssr66314 transcription start site region 66314 1496 bp upstream
Tssr66315 transcription start site region 66315 1516 bp upstream
Tssr66316 transcription start site region 66316 1575 bp upstream
Tssr66317 transcription start site region 66317 1587 bp upstream
Tssr66318 transcription start site region 66318 1632 bp upstream
Tssr66319 transcription start site region 66319 1655 bp upstream
Tssr66320 transcription start site region 66320 1682 bp upstream
Tssr66321 transcription start site region 66321 1700 bp upstream
Tssr66322 transcription start site region 66322 1720 bp upstream
Tssr66323 transcription start site region 66323 1766 bp upstream
Tssr66324 transcription start site region 66324 1795 bp upstream
Tssr66325 transcription start site region 66325 1825 bp upstream
Tssr66326 transcription start site region 66326 1866 bp upstream
Tssr66327 transcription start site region 66327 1880 bp upstream
Tssr66328 transcription start site region 66328 1896 bp upstream
Tssr66329 transcription start site region 66329 1935 bp upstream
Tssr66330 transcription start site region 66330 1954 bp upstream
Tssr66331 transcription start site region 66331 1968 bp upstream
Tssr66332 transcription start site region 66332 1989 bp upstream
Tssr72199 transcription start site region 72199 952 bp upstream
Tssr72200 transcription start site region 72200 within coordinates
Tssr72201 transcription start site region 72201 495 bp downstream
Tssr72202 transcription start site region 72202 1358 bp downstream
Tssr72203 transcription start site region 72203 1744 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory