rs235943224 SNP Detail

Summary

• ID
  rs235943224
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9468179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTATGCTG GAACTAGATC ACAGAAAACC
  TGCAATAGCC ACTTCCTCCA GGCACTCGTG TGTCAGCAAA AGCTGAGTCC CCAGCAACCG
  CCTCCGAGCC TTCCCCTTTG TTTCCCTCAG TGATGCTAGG GTCTTGAAAC TCAGCCCAGT
  R
  CAATCATTGG TGTTTGAGCT GGCAACTGGG GGTCTAATTG CCAACTAAGA TGGATATCTC
  TGGCTCTGGA GAAACAGCTG GGATAGGACA TTGTTGCTTC TCTGCGGCAG GCAGCTCATG
  GTAAGTAGGC ACTGTGGGCA TGGGGCAGCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320650898	CHEV_3_9403119	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235943224					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9468179 () rs orientation: forward

Symbol	Name	Function Class
C030034L19Rik	RIKEN cDNA C030034L19 gene	within coordinates
Gm55345	predicted gene, 55345	634 bp downstream
Rr573418	regulatory region 573418	1939 bp distal
Rr573420	regulatory region 573420	29 bp distal
Rr573421	regulatory region 573421	within coordinates
Tssr28343	transcription start site region 28343	92 bp downstream
Tssr28344	transcription start site region 28344	27 bp downstream
Tssr28345	transcription start site region 28345	within coordinates