rs235943858 SNP Detail

Summary

• ID
  rs235943858
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41494238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGATGGAC TTTAAAGTAA
  AGAACGATAG ATATGGATTT TCTAAATATT ATGGAGTGAA AGAAATAGCT GGGTGAATTT
  GGTATTGTTG CATTCTTTGT GGGGGGTCAA TCAATGCTCA TGGCTCTCTT TTAGAAATTA
  GAAAGATGGC TATCAAGGAT GTTAATTCTA CCTGACAAAG TTATTGGTAA TATCAAACCC
  M
  ATTTCAAAAT AATCCCCTCT CGAGGCGATT GTGAGCATTT CCTACTTTGT AGTTTTCTGA
  GATTGTAACT TTCCATGGCA GGGGGAGTCC CACACCTCAG TTCCACCTCA CACTGGGAGA
  GAAGGACGAG GTGCTTTACC TTGTCTTTGT TATAGAAAAT TCTGGGTGTG TGGTTTCCTT
  TAAACCGTTT TACTCTCCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377342641	MGP_WTSI_9_41391025	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235943858					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377342641	MGP_WTSI_9_41391025	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41494238 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	90 bp downstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	940 bp downstream
Rr677062	regulatory region 677062	1591 bp distal
Rr677063	regulatory region 677063	1477 bp distal
Rr677064	regulatory region 677064	1329 bp distal
Rr677065	regulatory region 677065	930 bp distal
Rr677066	regulatory region 677066	803 bp distal
Rr677067	regulatory region 677067	222 bp distal
Rr677068	regulatory region 677068	within coordinates
Rr677069	regulatory region 677069	1846 bp proximal
Tssr84521	transcription start site region 84521	1975 bp downstream
Tssr84522	transcription start site region 84522	1938 bp downstream
Tssr84523	transcription start site region 84523	1842 bp downstream
Tssr84524	transcription start site region 84524	1682 bp downstream
Tssr84525	transcription start site region 84525	1626 bp downstream
Tssr84526	transcription start site region 84526	1591 bp downstream
Tssr84527	transcription start site region 84527	938 bp downstream
Tssr84528	transcription start site region 84528	82 bp upstream
Tssr84529	transcription start site region 84529	1469 bp upstream