rs235946438 SNP Detail

Summary

• ID
  rs235946438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48655120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACGGTGT GAATTTCTGC
  ACTGTGTTAG TTATTGTTTG GTTGCTGTGA GAAAACATCT TAACAAAAGC AACTCAGCAA
  AGGAAGGGTC CATTTTGGCT TGTAGCGTCG GGGATACACT CCATCCTGGA GGGGACACAT
  GGTGGCCAGA GGCAGCTGTA CATTGCATGC TCAGTCAGGA AGCTAAGAGA TACACGCAGC
  Y
  TCTGGGTTCT CTTTGTCCTT TTGATATAGC TAGGGATTTT GGCCCACGGA ATGTTACTGC
  CCATAGGTCA GGGTGGATCT TCTTACACCA AAGAACTGAG TCCAGATAGT CTCTCATTCA
  TGTTCCTATA GGCTAACCTG ACCTAGAAAA TCCCTCACGG GCAAGCTCAT AGGTTTGCCC
  CTAGATGATT CTAGAGCCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325408116	CHEV_17_48487417	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235946438					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48655120 () rs orientation: forward

Symbol	Name	Function Class
Rr335233	regulatory region 335233	1920 bp distal
Rr335234	regulatory region 335234	1119 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	1675 bp downstream
Tssr145094	transcription start site region 145094	1647 bp downstream
Tssr145095	transcription start site region 145095	1599 bp downstream
Tssr145096	transcription start site region 145096	1566 bp downstream
Tssr145097	transcription start site region 145097	561 bp downstream
Tssr145098	transcription start site region 145098	219 bp downstream
Tssr145099	transcription start site region 145099	388 bp upstream
Tssr145100	transcription start site region 145100	417 bp upstream
Tssr145101	transcription start site region 145101	454 bp upstream
Tssr145102	transcription start site region 145102	553 bp upstream
Tssr148525	transcription start site region 148525	598 bp downstream