rs235952594 SNP Detail

Summary

• ID
  rs235952594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115055649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATTTATG GTCCTCTGGA
  ATGTGAGGAG TAAGCGCTCG CTAGCTGGTA TCTGGGAGCC TGGTGGGAGG ACCTTAGAAG
  AGGAGGAAAA GGAGAAAGAT GGGTGGGGGA GGGAGCAGGA ACAGGCCAGG CAGCGTCCTG
  CAGAGCCGAC CCTCGCAGGT GGTCCCGCCC TGGTGTCTCC TCTTCTCTGT CCAGCGATTG
  Y
  AAGCCGGCTG GTTGGGTTTT GCCAGTGGTT GGTATTTCCC CCAAACAACC CCAGTTTGGA
  TCAGCTGCTG GAGGGGCAGT TGGCAAAACA GGAGTTGTGC TGAGAGCCTC CCTGTCCCTT
  AGAAAACAAG GAGGGAAGGA GGCCAGGTTC AGGGCTCAGA CCCTGGGAGC AGGGTCCCTT
  CAGTACGCAC TGGCTCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384822787	MGP_WTSI_11_115026137	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235952594					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384822787	MGP_WTSI_11_115026137	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115055649 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	494 bp distal
Cpgi4110	CpG island 4110	within coordinates
Gm72084	predicted gene, 72084	501 bp upstream
Nherf1	NHERF family PDZ scaffold protein 1	within coordinates
Rr369433	regulatory region 369433	1793 bp downstream
Rr403111	regulatory region 403111	1460 bp downstream
Rr459783	regulatory region 459783	1472 bp distal
Rr459784	regulatory region 459784	11 bp distal
Rr459785	regulatory region 459785	233 bp distal
Tssr3727	transcription start site region 3727	1452 bp downstream
Tssr105840	transcription start site region 105840	1475 bp downstream
Tssr105841	transcription start site region 105841	1440 bp downstream
Tssr105842	transcription start site region 105842	1410 bp downstream
Tssr105843	transcription start site region 105843	1404 bp downstream
Tssr105844	transcription start site region 105844	1374 bp downstream
Tssr111730	transcription start site region 111730	1688 bp upstream