rs235953319 SNP Detail

Summary

• ID
  rs235953319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91179356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCAGTCCT CTTTGGATGC CCTAAAAGTT
  GGTCCCACCC AGAGGAGGAA CTAACTGGGC CAAATACAAC TTGTGGAGTT GGAAACTGAG
  CATGCTGTTC AGAATAGCTG ATCGGTTCCC AAAATACTGC CTTAGTCACA GTGTGATTTT
  Y
  GAGCAAAGGG AAGTTTGGGT CAAAGTGGGG TTTTCCAGAG GTGGGACGTG TTGAGGAGGG
  AACGAGAATT CTGAGGCAGC TTCTACCCTT TTGATAGTTT GAGTAATTTT TTTTTTGTTT
  GATCCCTTTG TGGAGATTTA ATTTTCTGAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319839839	CHEV_1_93148211	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235953319					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91179356 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	543 bp distal
Rr366958	regulatory region 366958	1388 bp downstream
Rr415587	regulatory region 415587	1058 bp distal
Rr415588	regulatory region 415588	within coordinates
Rr415589	regulatory region 415589	229 bp proximal
Tssr8065	transcription start site region 8065	1418 bp downstream
Tssr8066	transcription start site region 8066	1324 bp downstream
Tssr8067	transcription start site region 8067	1254 bp downstream
Tssr8068	transcription start site region 8068	1126 bp downstream
Tssr8069	transcription start site region 8069	1048 bp downstream
Tssr12938	transcription start site region 12938	1559 bp upstream
Tssr12939	transcription start site region 12939	225 bp upstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	within coordinates