rs235959836 SNP Detail

Summary

• ID
  rs235959836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8798989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGAATGT TAGTTACTTG
  ACTGGGGCTT TTTACTTTGT CCCTGTTGTG TTTATATTTT AAGTCTCCTG TCCAGGCTGT
  AAATAAGCAT ATTTATAGAC TTATTCTACA CTGGTGCCCT TAAGGCTCCT AACTAACTGA
  GCTGAAATGA TTTAGGGGTT CTAGTGGAGT AACCTTGTGG TAGGTTTGTG GAAACTTCCC
  Y
  CAGGAGTTAA CGACTTTCTC CTTTTGAAAT GCTTGCATGG TTAGAGCTAA CCTATAGTGA
  CTGTCAGGAG GGAGAGCTGC TTCTAAGTTT TACTTCCAAG TAGGTTTTTT TGCCTTAGAG
  TTTTTTGTAC TGTTTCGTTG TTTCTTGGTT TTTGTTCTGG ATCTTAGTGT TATAAAATTG
  GAATCTATTT TACAATGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401708519	MGP_WTSI_19_8896115	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235959836					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401708519	MGP_WTSI_19_8896115	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8798989 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10577	CpG island 10577	556 bp distal
Hnrnpul2	heterogeneous nuclear ribonucleoprotein U-like 2	within coordinates
Rr363768	regulatory region 363768	within coordinates
Rr370451	regulatory region 370451	1090 bp downstream
Tssr154831	transcription start site region 154831	1591 bp downstream
Tssr154832	transcription start site region 154832	1565 bp downstream
Tssr154833	transcription start site region 154833	1549 bp downstream
Tssr154834	transcription start site region 154834	1486 bp downstream
Tssr154835	transcription start site region 154835	1376 bp downstream
Tssr154836	transcription start site region 154836	1311 bp downstream
Tssr154837	transcription start site region 154837	944 bp downstream
Tssr154838	transcription start site region 154838	921 bp downstream
Tssr154839	transcription start site region 154839	1230 bp upstream
Tssr158069	transcription start site region 158069	1835 bp upstream
Tssr158070	transcription start site region 158070	294 bp upstream