rs235965888 SNP Detail

Summary

• ID
  rs235965888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21501382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGACAATA GTGCCGCAGC
  CACCAGCCGT GTATCCTCTC GGACAACAGG CCACAGTGTG AATACCAGCC CGGCTGCTGA
  CAAGGCCAGG CCCAGGGCTC CAAAGAGCCA CTGTATCCAC TGCACTGGGA TAAGCCACAG
  GACCTAATGT AACAAGTATA TATCTGGTGA CCATACTGGT GGGCCATGTA GCTCCCAGCA
  Y
  CCCCCAGGGC CAAGCCAAAC TCACCACAGT AGGGATGAAG ACAAAGAGTG AGTAGCCGTA
  GACACAGACT GTCTCCAGGA AGGTGTACAG CCCCATGCGC TCCCTCGTGC CCTGACGCCA
  CCGCAGGAAG CCCCACAGCG CCAGCGGCAC TAGCCACGCA TAGCAGTAGA TGGTGATGCC
  TGCTATGGTC ACTAGGGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376869867	MGP_WTSI_9_21394530	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235965888					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376869867	MGP_WTSI_9_21394530	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21501382 () rs orientation: forward

Symbol	Name	Function Class
Carm1	coactivator-associated arginine methyltransferase 1	619 bp downstream
Rr674931	regulatory region 674931	1591 bp distal
Rr674932	regulatory region 674932	991 bp proximal
Tssr84018	transcription start site region 84018	1884 bp downstream
Tssr84019	transcription start site region 84019	1570 bp downstream
Tssr84020	transcription start site region 84020	1481 bp downstream
Tssr84021	transcription start site region 84021	1176 bp downstream
Tssr84022	transcription start site region 84022	865 bp downstream
Tssr84023	transcription start site region 84023	842 bp downstream
Yipf2	Yip1 domain family, member 2	within coordinates