rs235966038 SNP Detail

Summary

• ID
  rs235966038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28450896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGGGACT TCAGACACCA
  ACAGGTCCTC TCCCCAGACA GCTCAGTAGC CCTGTTGGAG CAGGTACTCA GGCAGGGCTG
  TGAGGATCAG CAGTTGGCAC CCCCTCCTCG CCTCAGTGCT GATTTCAGGG CTGTTGAGCT
  TGACGACACC AAATGGATCC TAGACCAGGG CTTGAAGTTC TGGGGTGGGG GTGGGGTGGG
  R
  TTCTCTGGGA AACTGGGATC CATACCCTGC TTCCTGCCCT GGGGCACCCA GATATTGAGG
  TAGAGGCAGT CTTCTTGCCC ATAGGTGTTG TCCTGGGTGA TGGTGGCCTG TAGGCATCGT
  TTCTTGAAGT TTGTAGCCTT CAGCGTCCCT ACAGTGAGAG AAGGGCAAGG TGTAAAGAGA
  ACCAGCCAGG GCCAGCCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353478972	MGP_WTSI_2_28416404	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235966038					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353478972	MGP_WTSI_2_28416404	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28450896 () rs orientation: forward

Symbol	Name	Function Class
Cel	carboxyl ester lipase	within coordinates
Gm13381	predicted gene 13381	1313 bp upstream
Rr553836	regulatory region 553836	97 bp distal
Tssr16963	transcription start site region 16963	285 bp downstream
Tssr16964	transcription start site region 16964	64 bp upstream
Tssr16965	transcription start site region 16965	1625 bp upstream
Tssr23262	transcription start site region 23262	1489 bp upstream
Tssr23263	transcription start site region 23263	1447 bp upstream
Tssr23264	transcription start site region 23264	1245 bp upstream
Tssr23265	transcription start site region 23265	1203 bp upstream
Tssr23266	transcription start site region 23266	1022 bp upstream
Tssr23267	transcription start site region 23267	992 bp upstream
Tssr23268	transcription start site region 23268	309 bp upstream
Tssr23269	transcription start site region 23269	277 bp upstream
Tssr23270	transcription start site region 23270	205 bp upstream
Tssr23271	transcription start site region 23271	296 bp downstream
Tssr23272	transcription start site region 23272	320 bp downstream
Tssr23273	transcription start site region 23273	350 bp downstream
Tssr23274	transcription start site region 23274	380 bp downstream
Tssr23275	transcription start site region 23275	444 bp downstream
Tssr23276	transcription start site region 23276	1527 bp downstream
Tssr23277	transcription start site region 23277	1549 bp downstream