rs235970828 SNP Detail

Summary

• ID
  rs235970828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152181311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGGCGCAA CTGCACAATG GCAGGAAGCG
  GGGCTCAGTG CTTTGTCCCT AGCGCGGCGC AGACCGTAGC TTCCTCCGGC CACCATGGGG
  ACAGGACCGG GCGTCTCCGG GCGCCGAGCA GCAGCCAGGC CCAGCTCTGA GCTACCCTCC
  Y
  CAGACTCCCA GCTCCTCTGG GTCGGGGGTC ATGCCCACAG CAGCGACAGC CAGGTAGCGG
  GACGTGGGTG GGCTAAAGCC TAACGGGTGG TGTGCATGAC TTAACTTGAT CCTCTCTGTC
  CCCCTCCCCA GGGTGGCTGA GCCCCTATCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321433896	CHEV_4_151470963	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235970828					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152181311 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15387	CpG island 15387	within coordinates
Plekhg5	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	within coordinates
Rr377434	regulatory region 377434	within coordinates
Tssr40496	transcription start site region 40496	138 bp downstream
Tssr40497	transcription start site region 40497	72 bp downstream