rs235978007 SNP Detail

Summary

• ID
  rs235978007
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135144822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTACGC GTGGGTGTGG
  ACAGCTCGGG AAAGGGGAGG GAGACGGGCC GGGGCCGGCG CGGTGCCCGG GGGGCTGTGG
  GCGGCCCGAG CGGGCAGCCC TCGCGGCTGG GTGGGGTAGG GTGGGGAGAG GCCGGCGGCG
  GAGCCGGGGC CCGGCCGCAG GGGGAGGGGG CATGGGCGCG TCCTCGCGCC GGAGCTCCGC
  K
  GCCGCCGGGC GCGTGGTGGC GAGGTGGCGG GCGAGCGAGC GGGCGGGCGC GCGCACGCAG
  GAGCGCGCTG CGAGGCGGAG AGTACGGTGG TGTCAGGGGC GACCCAGAAC AGCCCTCGCC
  GTGGGGACGG GAGCGCACCC GGGGCCCATT GCCTTGTGCT GGCTCGCTGT CCCTTGGAGC
  CGAAACCGAA AGGAGCCCGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss359834787	MGP_WTSI_3_135102025	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs235978007					SNP	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359834787	MGP_WTSI_3_135102025	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135144822 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930539J05Rik	RIKEN cDNA 4930539J05 gene			396 bp upstream
Cpgi13855	CpG island 13855			within coordinates
Rr367562	regulatory region 367562			761 bp downstream
Rr367563	regulatory region 367563			617 bp downstream
Rr398041	regulatory region 398041			1114 bp upstream
Rr585708	regulatory region 585708			1021 bp distal
Rr585709	regulatory region 585709			817 bp distal
Rr585710	regulatory region 585710			486 bp distal
Rr585711	regulatory region 585711			within coordinates
Rr585712	regulatory region 585712			161 bp proximal
Rr585713	regulatory region 585713			306 bp proximal
Rr585714	regulatory region 585714			1807 bp proximal
Tssr1058	transcription start site region 1058			1201 bp downstream
Tssr31809	transcription start site region 31809			935 bp downstream
Tssr31810	transcription start site region 31810			908 bp downstream
Tssr31811	transcription start site region 31811			758 bp downstream
Tssr31812	transcription start site region 31812			671 bp downstream
Tssr31813	transcription start site region 31813			609 bp downstream
Tssr31814	transcription start site region 31814			576 bp downstream
Tssr31815	transcription start site region 31815			521 bp downstream
Tssr31816	transcription start site region 31816			477 bp downstream
Tssr31817	transcription start site region 31817			281 bp downstream
Tssr31818	transcription start site region 31818			8 bp downstream
Tssr31819	transcription start site region 31819			within coordinates
Tssr31820	transcription start site region 31820			28 bp upstream
Tssr31821	transcription start site region 31821			40 bp upstream
Tssr31822	transcription start site region 31822			323 bp upstream
Tssr31823	transcription start site region 31823			381 bp upstream
Tssr31824	transcription start site region 31824			409 bp upstream
Tssr35782	transcription start site region 35782			1055 bp upstream
Tssr35783	transcription start site region 35783			423 bp upstream
Tssr35784	transcription start site region 35784			356 bp upstream
Tssr35785	transcription start site region 35785			1310 bp downstream
Ube2d3	ubiquitin-conjugating enzyme E2D 3			Intron
				Noncoding-Transcript-Variant