rs235978391 SNP Detail

Summary

• ID
  rs235978391
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:26495382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACTGGAC CTTGCTCCTC
  TGAGAACCGA ACTCTCTCCT GTGGAGGACG ATTATCTGCT GCATAATTTT ACTCCCTTTT
  TAGTTCAGTC AAACTGAAAG AAAAATAAAC AGACTGTATT CTAATAACAA CAGTCCGTAG
  ATAGCCAGAA GATGTAGCTT GTTGAAGGAT AGCTGGGCGT GAATGTCCCT GTAGCTGGTC
  R
  GAGTTTCCTT CCCATCTCAG CCTCACCAGT CCAGCTTCAG GTCAGCTTTA CTCCACACAT
  ACTTTCCGCC ACGCTTCAGA AACATCTTCT CATCAAATCC ACTGAACTTT ATTGCTTCTT
  CCACGCCAAC ATCCAGAATA GACTTGGAAG GGTCCTTCCG GCCACCGGTA CAGTTCAGAA
  AGCGCATCTG GGAAAAGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385360848	MGP_WTSI_12_27130248	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235978391					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385360848	MGP_WTSI_12_27130248	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26495382 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	994 bp distal
Rr464137	regulatory region 464137	992 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	mRNA-UTR
Tssr112998	transcription start site region 112998	1630 bp downstream
Tssr112999	transcription start site region 112999	1565 bp downstream
Tssr113000	transcription start site region 113000	1464 bp downstream
Tssr113001	transcription start site region 113001	977 bp downstream
Tssr113002	transcription start site region 113002	953 bp downstream
Tssr113003	transcription start site region 113003	865 bp downstream
Tssr113004	transcription start site region 113004	814 bp downstream
Tssr113005	transcription start site region 113005	805 bp downstream
Tssr113006	transcription start site region 113006	438 bp downstream
Tssr113007	transcription start site region 113007	348 bp downstream
Tssr113008	transcription start site region 113008	180 bp downstream
Tssr113009	transcription start site region 113009	165 bp downstream
Tssr113010	transcription start site region 113010	within coordinates
Tssr115905	transcription start site region 115905	1861 bp upstream
Tssr115906	transcription start site region 115906	1741 bp upstream
Tssr115907	transcription start site region 115907	1682 bp upstream
Tssr115908	transcription start site region 115908	1638 bp upstream
Tssr115909	transcription start site region 115909	1554 bp upstream
Tssr115910	transcription start site region 115910	1500 bp upstream
Tssr115911	transcription start site region 115911	1452 bp upstream
Tssr115912	transcription start site region 115912	1438 bp upstream
Tssr115913	transcription start site region 115913	1403 bp upstream
Tssr115914	transcription start site region 115914	1355 bp upstream
Tssr115915	transcription start site region 115915	1312 bp upstream
Tssr115916	transcription start site region 115916	1271 bp upstream
Tssr115917	transcription start site region 115917	1221 bp upstream
Tssr115918	transcription start site region 115918	1206 bp upstream
Tssr115919	transcription start site region 115919	1175 bp upstream
Tssr115920	transcription start site region 115920	1143 bp upstream
Tssr115921	transcription start site region 115921	767 bp upstream
Tssr115922	transcription start site region 115922	742 bp upstream
Tssr115923	transcription start site region 115923	649 bp upstream
Tssr115924	transcription start site region 115924	589 bp upstream
Tssr115925	transcription start site region 115925	574 bp upstream
Tssr115926	transcription start site region 115926	223 bp upstream
Tssr115927	transcription start site region 115927	182 bp upstream
Tssr115928	transcription start site region 115928	1789 bp downstream
Tssr115929	transcription start site region 115929	1819 bp downstream