rs235986137 SNP Detail

Summary

• ID
  rs235986137
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:86413285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCGCCGC GCACCAGCCC
  TGGGGGCACC GGCTGTGCTC AGCTGCCCAG TCTCACCCAG GCTTCAGGCT TCCTGGAGGG
  TCATGCAACC TATAGCTATG ATTAAGACTC TCACTTGGTA ACTCTGCCAT ATTCCTTATC
  TTTCCCCCCC TTCCCTCCCC TCCCCCTTTA ACCACCCCCG TGTTCCCCTC CACCACCCTT
  R
  AGCCCTCCCC CGCCCCCAGA CGCCCACCCT TAGACTCCTT TTCCTGCAAG ATCGCAGAGG
  TGGCGCGCAG CCCGACGAGC CGATGACGGA CCCCTGCCTC CCGCCTTCAA TGCCTCAGCA
  GAAGACCCCC AAAGGCTGGA GAGAGGAGGG CTGCGGCTGG ACATCCTCCG GGCGACGCTG
  CTCGGACCTG GTGCTAGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401532361	MGP_WTSI_18_86564552	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235986137					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401532361	MGP_WTSI_18_86564552	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:86413285 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10352	CpG island 10352	795 bp distal
Cpgi10353	CpG island 10353	within coordinates
Gm54041	predicted gene, 54041	1385 bp upstream
Neto1	neuropilin (NRP) and tolloid (TLL)-like 1	within coordinates
Tg(Ddx4-cre)1Dcas	transgene insertion 1, Diego H Castrillon	within coordinates
Tssr152242	transcription start site region 152242	378 bp downstream
Tssr152243	transcription start site region 152243	357 bp downstream
Tssr152244	transcription start site region 152244	297 bp downstream
Tssr152245	transcription start site region 152245	231 bp downstream
Tssr152246	transcription start site region 152246	192 bp downstream
Tssr152247	transcription start site region 152247	147 bp downstream
Tssr152248	transcription start site region 152248	24 bp upstream
Tssr152249	transcription start site region 152249	115 bp upstream
Tssr152250	transcription start site region 152250	386 bp upstream