rs235988082 SNP Detail

Summary

• ID
  rs235988082
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30281171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGGATA AGTTCAGGCT
  GGGTAGGGAG ACGGAAGACA AGCTGAACAC CACTGGGGGA TTCTGAGTCC CCAGCCTACT
  TAGAGTAACC TACAATTCTG GCTTCCACGG GCTGCCAGAC TAAGCCACTG TAGCTAGTGA
  CCTCAGAACA TAGAATATGG AGGGCCAAGG CTCCAACCTA GACCTACTGG GTACCCCCAG
  K
  TCTAAGGCAG ACCCGGAACC TGCTTTTATT TTTATTTTTT TACTGTACAT GCTCTGGGCC
  TTAGTCAGAG GTCAGAGAAC CGTTGCATAC TGGCAGAGGC AGACAAGGAA ATAATTACAG
  TCAAGTGTAG CCAGAGATGA GGTAGGCAAA GGAGGTGCAA TTGTGGGAGA CCACTGGAAC
  TCCCCCACCC CCTTTCTGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353515013	MGP_WTSI_2_30246679	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235988082					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353515013	MGP_WTSI_2_30246679	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30281171 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11435	CpG island 11435	817 bp proximal
Dolpp1	dolichyl pyrophosphate phosphatase 1	1095 bp upstream
Gm75227	predicted gene, 75227	within coordinates
Rr396863	regulatory region 396863	1027 bp upstream
Rr554303	regulatory region 554303	1950 bp distal
Rr554304	regulatory region 554304	605 bp proximal
Rr554305	regulatory region 554305	1106 bp proximal
Rr554306	regulatory region 554306	1224 bp proximal
Rr554307	regulatory region 554307	1268 bp proximal
Tssr17111	transcription start site region 17111	1102 bp upstream
Tssr17112	transcription start site region 17112	1246 bp upstream
Tssr17113	transcription start site region 17113	1288 bp upstream