rs235993441 SNP Detail

Summary

• ID
  rs235993441
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152951477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCATCTCC TCTGTGTGAC
  ACTGGGGCAT GTCACTGGCT ACTCTCTGGA TTCCAGCTTC CAACTCTGTA AAATGGGCTG
  TTTTACATTC ATCTGAAGCT GAGTTGTCCA GAGAAGGGGA GCAGTGCTGC TGGGTACTGG
  AGAGAGAGCC TGGTTTGTCT GTGCCTCTGT TTGCATAGCT GCAGGATGGA GATGGTAAGA
  R
  GACAGGTTGA ATGTTCCCTA TCCAAACTAC ACCTGATCAG AGGGGTTTAG GATTTCCGAG
  TGTGGCAGAA TTCTGTATGT CAAGTGCACA GCGAGGCATC CTGGAGTGAA AATTAGGTCT
  TAAAGAGACA TTTGTGTATG TTACACGTGC TTCTGTATGT GTTCACTGGT TGGTGTGTAC
  TCTGGGGTTC CTACACACGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356165435	MGP_WTSI_2_152935293	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235993441					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356165435	MGP_WTSI_2_152935293	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152951477 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	405 bp distal
Hck	hemopoietic cell kinase	within coordinates
Rr567550	regulatory region 567550	1519 bp distal
Rr567551	regulatory region 567551	1079 bp distal
Rr567552	regulatory region 567552	1029 bp distal
Rr567553	regulatory region 567553	865 bp distal
Tssr20863	transcription start site region 20863	1884 bp downstream
Tssr20864	transcription start site region 20864	1848 bp downstream
Tssr20865	transcription start site region 20865	1073 bp downstream
Tssr20866	transcription start site region 20866	1015 bp downstream
Tssr26882	transcription start site region 26882	535 bp upstream