rs235993728 SNP Detail

Summary

• ID
  rs235993728
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38059621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAAATTT AATAAAGTTT
  TATTATGAAT ACTTCTTTTG CTGTTAATAA AGACTCAGTG GCCAAAGAGA TTTCCTTCTC
  AAAATTCATG TCAGATGTTA ACTAAAATTT TCCCTTTCTA TAAAAAAAAA AAAACAAAAA
  AACAGCTTAA CCTTTGAAAT ATAAAAGGAA AAGTAAATTA AGAGACTTAA ATTAGTTACA
  Y
  TTAGATGACA GGGAGCATGT TTTTGTTTCA TTTACTGGTT TGTCTGTGTG GACATATTGT
  GCCCATCATA TGGGGAGGGA GAGGTCAGAG GACAGCCTTT AGGAATCAGC TCTCAGGACC
  ACTCAGCTTC AGGAATCAAA CATGGGCTAC CCACTTGGTA GCTTTTCCCC TTTATCTGCT
  AAGTCTTGTT ACTGACCTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349287111	MGP_WTSI_1_38077385	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235993728					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349287111	MGP_WTSI_1_38077385	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38059621 () rs orientation: forward

Symbol	Name	Function Class
Eif5b	eukaryotic translation initiation factor 5B	within coordinates
Rr16031	regulatory region 16031	221 bp distal
Tssr6339	transcription start site region 6339	1517 bp downstream
Tssr6340	transcription start site region 6340	1491 bp downstream
Tssr6341	transcription start site region 6341	1459 bp downstream
Tssr6342	transcription start site region 6342	1431 bp downstream
Tssr6343	transcription start site region 6343	1413 bp downstream
Tssr6344	transcription start site region 6344	1377 bp downstream
Tssr6345	transcription start site region 6345	1348 bp downstream
Tssr6346	transcription start site region 6346	1297 bp downstream
Tssr6347	transcription start site region 6347	1260 bp downstream
Tssr6348	transcription start site region 6348	1120 bp downstream
Tssr6349	transcription start site region 6349	1058 bp downstream
Tssr6350	transcription start site region 6350	1127 bp upstream
Tssr6351	transcription start site region 6351	1164 bp upstream
Tssr6352	transcription start site region 6352	1190 bp upstream
Tssr6353	transcription start site region 6353	1213 bp upstream
Tssr6354	transcription start site region 6354	1694 bp upstream
Tssr6355	transcription start site region 6355	1733 bp upstream
Tssr11327	transcription start site region 11327	1647 bp downstream