rs235999761 SNP Detail

Summary

• ID
  rs235999761
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75466318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAGTTCC CAGCAACACT
  GAGGGGCCCA CACTTTTGAT CGTGATGCTG TAAGGGTATA TATCCTAGGA TTGAGACACT
  AGAAAACTAA ATGTGGGATG GAAAAGAGCC AACGGTACTG GAAGATGAGA GACGTCCACT
  GGTAGCAGAG AACAGGTGTG GCAAGCCAGA TGAGCTCTCC CTAATCAAGG GCCATCCTGC
  S
  CTGACTTGGC AGACATGTCA GTGTCTTTGA ATCACGGTGA CAGCCTAGAG TGGTATAGAT
  GCTTGGAGAA GCAACCCCAG AGGACTCTCC TGTGGGTCTC AAGTCACTAA CACAGCCGAG
  GCTGTCTCAG CTAGAACCCC CCCCCCCCCC ATTGGAAGCA AAGAGCCCAA AGGGTGCAAG
  CTCAGAATGG TTTCCATATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383901630	MGP_WTSI_11_75388994	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235999761					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383901630	MGP_WTSI_11_75388994	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75466318 () rs orientation: forward

Symbol	Name	Function Class
Rr402730	regulatory region 402730	1783 bp downstream
Rr402731	regulatory region 402731	335 bp upstream
Rr451211	regulatory region 451211	1668 bp distal
Rr451212	regulatory region 451212	1922 bp distal
Rr451213	regulatory region 451213	301 bp proximal
Slc43a2	solute carrier family 43, member 2	within coordinates
Tssr102985	transcription start site region 102985	1280 bp upstream
Tssr102986	transcription start site region 102986	1398 bp upstream
Tssr102987	transcription start site region 102987	1445 bp upstream
Tssr102988	transcription start site region 102988	1524 bp upstream
Tssr102989	transcription start site region 102989	1598 bp upstream
Tssr102990	transcription start site region 102990	1635 bp upstream