rs236000972 SNP Detail

Summary

• ID
  rs236000972
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87005815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTGATGG CTCTGGGGTC
  AAAGACCTTC TTGTTTTCCA GAGGACTGGA GTTTGCTTCT CGGCTCAGCA CCCAGGTTGG
  GCAGTTTAGT TTGTGATTCC AACTTGAGAG GATTGTACAC TCTCTTGTGG CCTCTGTGGG
  TTCCTTTACA CACATGGCAA GGCAAACATA GACACACAAA CAAACAAATT TAAAAGAAAA
  W
  TTTTTGGTAA AGTATTTAAT ATCTTTATGT GTATGTGTGT GCTTGCTTGA GACTGTCCTT
  CACATGTGTG CAGGAGCTTG TGGAAGCCAG AAGAGGGTAC TGGATCTTCT GAAACTCAGA
  GTTGGTTTTG AGCAATCATG TGGATGCTGA GAATGGAACA AACCTAGATG CTCTGCAAGA
  CTAAGAGCTC TCTTAACCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323772697	CHEV_11_86928491	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236000972					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87005815 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mir301	microRNA 301			1900 bp downstream
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant
Tssr103909	transcription start site region 103909			1909 bp downstream