rs236002836 SNP Detail

Summary

• ID
  rs236002836
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86348840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATGCACA CACATACCTG
  TGGCACTCCC ATATAAAATA TAAGTAAATA ATTTTTGAAA AAAAGCAAAG GTAACTACTA
  TTTGGTGGCA ACTCATTTAT TTGAAGGACA ATTGTTCTCT TATACTTTTA ACACAGAATA
  TTACTTAAAT TTTGGCAATA CTTAATATTG ACACCTAGCA AAATACACAG CGTCCTCAGA
  W
  TAGCGTGCTC CTCATATATG GTTTAAAACT AGAACACGCA AAAACACTTG TAAAGACAAC
  AACCCTTTCG AATACGCGTT TGAAAGACGG CTAGATACAA AAAAAAGTGC TAAACTGGCT
  CTCGGTTTCA CACAAACTGT GCCTGAAATG ACGCGCATAA AGTGCTGGTG GATCCAGATG
  ATCGTACTTA AATAATACTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378354976	MGP_WTSI_9_86360394	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236002836					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378354976	MGP_WTSI_9_86360394	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86348840 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22101	CpG island 22101	1670 bp distal
Cpgi22102	CpG island 22102	130 bp proximal
Dop1a	DOP1 leucine zipper like protein A	354 bp upstream
Rr684095	regulatory region 684095	1848 bp distal
Rr684096	regulatory region 684096	1347 bp distal
Rr684097	regulatory region 684097	1808 bp distal
Rr684098	regulatory region 684098	within coordinates
Rr684099	regulatory region 684099	294 bp proximal
Rr684100	regulatory region 684100	378 bp proximal
Tssr2956	transcription start site region 2956	1172 bp upstream
Tssr86391	transcription start site region 86391	376 bp upstream
Tssr86392	transcription start site region 86392	386 bp upstream
Tssr86393	transcription start site region 86393	437 bp upstream
Tssr90780	transcription start site region 90780	1844 bp upstream
Tssr90781	transcription start site region 90781	1829 bp upstream
Ube3d	ubiquitin protein ligase E3D	1837 bp upstream