rs236008353 SNP Detail

Summary

• ID
  rs236008353
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68923786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGGTAAA TGAATCTTCA
  GTAGACATTT GTTGCCAATG AGAATGTCTT ATTAGCCAGG CAGTAGTTGC ACTTTAATTC
  CAGGACTTGG GAGGCAGCAG CAGGCAGATC TCAGAGCTTG AGACCAGCCT GGTTTACAGA
  CTGAGTTCCA GGACAGTCAG GGCTACACTG GACAATCCCT GTCTCAAAAA CAAAACGGGG
  W
  GGGGGGGGGG TGGGGGGGTG GGGGGGGCTG TCTTATTTGC AGAACAGCTG AATTTACTAA
  GTTGAATACT AATGTTCATA CTTAATCAAA CCCACTATCT TTATATTAGC CTTTGCGTGA
  CATGCTTTTA TTTAGTGTTT AATATTTCAT GTTGGTTTTA CATATGAAAT GTTTTACATC
  TTTATTTAAT GTTTGTAGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	DBA/2J	FVB/NJ	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358313479	MGP_WTSI_3_68820375	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	DBA/2J	FVB/NJ	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236008353					SNP	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358313479	MGP_WTSI_3_68820375	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68923786 () rs orientation: forward

Symbol	Name	Function Class
Rr578111	regulatory region 578111	635 bp proximal
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29518	transcription start site region 29518	345 bp downstream
Tssr29519	transcription start site region 29519	221 bp upstream
Tssr29520	transcription start site region 29520	239 bp upstream