rs236013902 SNP Detail

Summary

• ID
  rs236013902
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122824435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAACAGTTG TAGCCTAAGG
  CCCTTCTCTT GACAACTGAA TAAATAATGT ATCACAAGAC TAAACTACAT TCCATCTTCC
  GTCTTTGTAG ATTAACTCGT TCATCTTAGA CATACCTATC TGTACAAACA AGCTTGACTT
  TCTAGTGATT TAACACATGG AAAGTATCCA CATAATAGAT TATTATGGGA GCTGCTGGTT
  W
  TCTTTTTTTA AACTAAAGGT TGAGTGTAGT ACTATGTATA ATAGCTAAGA TATAGAATCT
  GCTTAGGCAT TGGTTGGTAG TTGGGTGGAT AATGGCACTT ACTACACACA CGTGCACATA
  CACATGTACA CACATGCGTG TGCATGCACA TACACAGTGC AGTGTTATTC AGCCATAACA
  ATGAGTGAAA TACTGGTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369914729	MGP_WTSI_6_122797494	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236013902					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369914729	MGP_WTSI_6_122797494	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122824435 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Tssr58709	transcription start site region 58709	493 bp upstream
Tssr58710	transcription start site region 58710	682 bp upstream
Tssr62965	transcription start site region 62965	941 bp upstream
Tssr62966	transcription start site region 62966	275 bp downstream
Tssr62967	transcription start site region 62967	313 bp downstream
Tssr62968	transcription start site region 62968	390 bp downstream
Tssr62969	transcription start site region 62969	694 bp downstream
Tssr62970	transcription start site region 62970	727 bp downstream
Tssr62971	transcription start site region 62971	792 bp downstream
Tssr62972	transcription start site region 62972	894 bp downstream
Tssr62973	transcription start site region 62973	953 bp downstream
Tssr62974	transcription start site region 62974	1020 bp downstream
Tssr62975	transcription start site region 62975	1131 bp downstream
Tssr62976	transcription start site region 62976	1177 bp downstream
Tssr62977	transcription start site region 62977	1240 bp downstream
Tssr62978	transcription start site region 62978	1317 bp downstream
Tssr62979	transcription start site region 62979	1348 bp downstream
Tssr62980	transcription start site region 62980	1373 bp downstream
Tssr62981	transcription start site region 62981	1392 bp downstream
Tssr62982	transcription start site region 62982	1553 bp downstream