rs236020189 SNP Detail

Summary

• ID
  rs236020189
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:95250544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCC CTCTCTGCGG TTCCCCGAGC
  S
  GAGACCGGAC GCGAGGAGTA GTAGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323413491	CHEV_10_94877316	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236020189					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:95250544 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2139	CpG island 2139	within coordinates
Gm33230	predicted gene, 33230	79 bp downstream
Rr225467	regulatory region 225467	within coordinates
Rr385140	regulatory region 385140	156 bp upstream
Socs2	suppressor of cytokine signaling 2	within coordinates
Tssr95358	transcription start site region 95358	909 bp upstream
Tssr99030	transcription start site region 99030	1081 bp upstream
Tssr99031	transcription start site region 99031	512 bp downstream
Tssr99032	transcription start site region 99032	603 bp downstream
Tssr99033	transcription start site region 99033	783 bp downstream
Tssr99034	transcription start site region 99034	815 bp downstream
Tssr99035	transcription start site region 99035	1291 bp downstream
Tssr99036	transcription start site region 99036	1325 bp downstream