rs236020335 SNP Detail

Summary

• ID
  rs236020335
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:57955049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCT GGGCGACTCC GATCAGAGCC
  C
  TGGTAGCAGG CTTTTGGGGC CCAAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321136098	CHEV_4_57967921	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236020335					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57955049 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14335	CpG island 14335	467 bp proximal
Gm35344	predicted gene, 35344	1703 bp upstream
Gm57068	predicted gene, 57068	135 bp upstream
Rr398279	regulatory region 398279	1259 bp upstream
Rr592846	regulatory region 592846	1872 bp distal
Rr592847	regulatory region 592847	959 bp distal
Rr592848	regulatory region 592848	within coordinates
Rr592849	regulatory region 592849	716 bp proximal
Rr592850	regulatory region 592850	1352 bp proximal
Rr592851	regulatory region 592851	1378 bp proximal
Rr592852	regulatory region 592852	1685 bp proximal
Tssr1183	transcription start site region 1183	1262 bp downstream
Tssr1184	transcription start site region 1184	1367 bp downstream
Tssr37396	transcription start site region 37396	1573 bp upstream
Tssr37397	transcription start site region 37397	1875 bp upstream
Tssr41865	transcription start site region 41865	1516 bp upstream
Tssr41866	transcription start site region 41866	1234 bp downstream
Txn1	thioredoxin 1	Intron