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rs236044069 SNP Detail
Summary
  • ID
    rs236044069
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:48039662 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGGGAAGAAA AACTAGGAAG
AATGGAAAGC GAGAGATGGA GAGGAGAGAT AGAGATTCAG TGGGCGTGCT TGGGGGCAGA
CTGGCAGAGA GACTGAGACA CACGGACAGA GCTAGGAGAC ACACAGAGAG AGAGAGGTAT
GGAAGGAGAA AGGGAAGAAA GAAGAAGGCA GGGCCCGGGC CTGACACATC CACCGCCTTC
Y
ACAGGGTCCC CCTGAAGAAA ATGAAGAGTA TCCGGGAGAC CATGAAGGAA CAAGGTGTCC
TCAAAGACTT TCTGAAGAAC CACAAGTATG ACCCTGGCCA GAAATACCAC TTTGGCAAGT
TTGGTGACTA CAGTGTACTC TATGAGCCCA TGGCCTATAT GGATGTAAGT CTTAACACCC
TTCTCCCAAC CCAGGGTGTC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss398352935 MGP_WTSI_17_47865686 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs236044069 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss398352935 MGP_WTSI_17_47865686 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:48039662 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D17Mit201 DNA segment, Chr 17, Massachusetts Institute of Technology 201 1402 bp distal
Pgc progastricsin (pepsinogen C) within coordinates
Rr528106 regulatory region 528106 1972 bp proximal
Tssr5147 transcription start site region 5147 13 bp upstream
Tssr5148 transcription start site region 5148 573 bp downstream
Tssr145003 transcription start site region 145003 1889 bp downstream
Tssr145004 transcription start site region 145004 within coordinates
Tssr145005 transcription start site region 145005 23 bp upstream
Tssr145006 transcription start site region 145006 32 bp upstream
Tssr145007 transcription start site region 145007 59 bp upstream
Tssr145008 transcription start site region 145008 93 bp upstream
Tssr145009 transcription start site region 145009 110 bp upstream
Tssr145010 transcription start site region 145010 513 bp upstream
Tssr145011 transcription start site region 145011 526 bp upstream
Tssr145012 transcription start site region 145012 538 bp upstream
Tssr145013 transcription start site region 145013 557 bp upstream
Tssr145014 transcription start site region 145014 1343 bp upstream
Tssr145015 transcription start site region 145015 1405 bp upstream
Tssr145016 transcription start site region 145016 1416 bp upstream
Tssr145017 transcription start site region 145017 1861 bp upstream
Tssr145018 transcription start site region 145018 1873 bp upstream
Tssr145019 transcription start site region 145019 1904 bp upstream
Tssr145020 transcription start site region 145020 1925 bp upstream
Tssr145021 transcription start site region 145021 1951 bp upstream
Tssr145022 transcription start site region 145022 1983 bp upstream
Tssr148459 transcription start site region 148459 59 bp downstream
Tssr148460 transcription start site region 148460 80 bp downstream
Tssr148461 transcription start site region 148461 119 bp downstream
Tssr148462 transcription start site region 148462 138 bp downstream
Tssr148463 transcription start site region 148463 541 bp downstream
Tssr148464 transcription start site region 148464 619 bp downstream
Tssr148465 transcription start site region 148465 1384 bp downstream
Tssr148466 transcription start site region 148466 1397 bp downstream
Tssr148467 transcription start site region 148467 1892 bp downstream
Tssr148468 transcription start site region 148468 1923 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory