rs236047861 SNP Detail

Summary

• ID
  rs236047861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142418962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAACAAA AAATCGCAGC
  TGAAACCTGA CTATTCACAG CAGGGCAGGT AGCCAGAGGA CAGACTGAGC ATGACAAGAG
  TCCAGTCCTT TGGCCTTTGG CCTTTAGACC AAACTCCTAC ACTCTCTGGA TGCTTATTTT
  GTCATTGGCA GAAGCACAAG CAGGAGTTTC CCTCAGACAC AAGCAGTTTT CCACAGACTG
  Y
  ACGGTGGTGC CTAGAGTCTA CCCCAGCCTG TGCCTAGCTG TGCTCTTCCC TCTGCCTCTC
  CTTATCTAGA ACTCTGAGTT TTATTCCCAC TTATTTTATT CTAAATGTAC AAGCTGGATT
  GTGGTGAGAG GCCAGATCTC GATTCTCCTT AAATGCTGTA CTTTTTTGGT ATACAAAGGC
  ATAAACCACG GTGTCTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370374021	MGP_WTSI_6_142421756	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236047861					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370374021	MGP_WTSI_6_142421756	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142418962 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	127 bp upstream
Rr640649	regulatory region 640649	1684 bp distal
Rr640650	regulatory region 640650	138 bp distal
Rr640651	regulatory region 640651	within coordinates
Tssr63950	transcription start site region 63950	431 bp upstream
Tssr63951	transcription start site region 63951	396 bp upstream
Tssr63952	transcription start site region 63952	354 bp upstream
Tssr63953	transcription start site region 63953	320 bp upstream
Tssr63954	transcription start site region 63954	251 bp upstream
Tssr63955	transcription start site region 63955	239 bp upstream
Tssr63956	transcription start site region 63956	121 bp upstream