rs236054977 SNP Detail

Summary

• ID
  rs236054977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:126419224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAATCTC TTTTAGAAAT
  AGGTTTAGGA GGGAGGAGAA TAAAAATCAA AGTAGCTAGC AACAGGCCAC GGATGGGGTC
  CTTGCTCATT TGAGCCAAAT GGGCAAAAGC CACAAGGATG AAAAGATGTC AGGTGGTTGC
  CTGTGTTCAA GGAGCATATC CTAACAGGCC CTTTTCTCGG AGGACTGGGG TGGGGACGGG
  Y
  GATGGGGGGG TCTGCCTCCC AGGCAGTGTG CAGCTCAGCT TCACTCCAAA ATAATATCAT
  ATTTCTGCCC ATCAATCAGA ATTAAGAAGC TTAGGAGGCA TAGACAGTTG CTGGTAGCAA
  CAGGGCACAT ACTCCAATTC AGCTGGGGCG GAGCCTGCAC TGGGGTGGGG GCACGTGAAG
  GAGTGAGAAA AAGGCCCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351345194	MGP_WTSI_1_128388064	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236054977					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351345194	MGP_WTSI_1_128388064	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:126419224 () rs orientation: forward

Symbol	Name	Function Class
Cpgi687	CpG island 687	1041 bp proximal
Nckap5	NCK-associated protein 5	within coordinates
Rr417489	regulatory region 417489	538 bp proximal
Rr417490	regulatory region 417490	909 bp proximal
Rr417491	regulatory region 417491	1245 bp proximal
Tssr13401	transcription start site region 13401	1196 bp downstream
Tssr13402	transcription start site region 13402	1308 bp downstream
Tssr13403	transcription start site region 13403	1353 bp downstream
Tssr13404	transcription start site region 13404	1376 bp downstream
Tssr13405	transcription start site region 13405	1413 bp downstream