rs236058842 SNP Detail

Summary

• ID
  rs236058842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:44507535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGGCTGC ATAGCCCCAG
  AGACTCATTC ACTCTTAGGG ACTTCTGGAG AGTAGTGACC GAGTGAAAAC CGCGCCCAAC
  AGCATTCGTG TCTGGGTTAG CACCAGAGTT AGAGGCATTT CAGAAGCCTG CTGAAGACTG
  AGTCTAGAAT GCCCATTCCC TTGCGGTCTA CTAAAGTCGT ATTGGTTGGG GCTTTAGGTT
  Y
  CTCTACCTCT CCTGACACGG AGATAATGTC TTCCGAGTGC CCTCAAGTCT CGATCTCGCG
  CACATAAAGT TCATCCCGCC ACCCTTGTTT CAGAGTGAAG AGCTGGACAC CTGGGATGGG
  CATCCTGCCT TTTCTGCCTG GTCAGTCCTT TTTTCCTCCA CGTTTGCCCC CGAAGTCCCA
  GGACAGGCAA GCAAGGGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383201265	MGP_WTSI_11_44430210	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236058842					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383201265	MGP_WTSI_11_44430210	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44507535 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2762	CpG island 2762	within coordinates
Cpgi2763	CpG island 2763	1437 bp proximal
Ebf1	early B cell factor 1	mRNA-UTR
Gm37695	predicted gene, 37695	within coordinates
Rr369170	regulatory region 369170	304 bp upstream
Rr445653	regulatory region 445653	119 bp proximal
Rr445654	regulatory region 445654	620 bp proximal
Tssr101029	transcription start site region 101029	578 bp upstream
Tssr101030	transcription start site region 101030	602 bp upstream
Tssr101031	transcription start site region 101031	646 bp upstream
Tssr101032	transcription start site region 101032	667 bp upstream
Tssr101033	transcription start site region 101033	779 bp upstream
Tssr101034	transcription start site region 101034	806 bp upstream
Tssr101035	transcription start site region 101035	843 bp upstream
Tssr101036	transcription start site region 101036	905 bp upstream
Tssr101037	transcription start site region 101037	939 bp upstream
Tssr101038	transcription start site region 101038	981 bp upstream
Tssr101039	transcription start site region 101039	1159 bp upstream
Tssr101040	transcription start site region 101040	1220 bp upstream
Tssr101041	transcription start site region 101041	1416 bp upstream
Tssr101042	transcription start site region 101042	1477 bp upstream
Tssr101043	transcription start site region 101043	1500 bp upstream
Tssr101044	transcription start site region 101044	1870 bp upstream
Tssr107570	transcription start site region 107570	1357 bp downstream