rs236059199 SNP Detail

Summary

• ID
  rs236059199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:127386491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCACACTG GGGAGAGAAA CAAAGAAAGA
  GGTCTAGTGC CTCCCAAGTT CATCTTTGGA GTTCTGACAC AGCGAGGACA AGCAGTGTTC
  CCACCACTAC CACCCCTGCC AGGCCAGCAC CAGACAACTC TTCTCCCAGT GTGAGACTCA
  R
  GGGAAATCCC AGTTCCGTGG GGCTCCTGGT TTCTATGTCT GGTTGCCAAA GGGAGGGGCA
  CTAATGTCTC TTTATCTCTA AAATATCTTC ATTCCAGCCT GAATGGCTAC ATTACTTGGT
  GGAAATGACC TGGGTCTTTC TGAACACGAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319963059	CHEV_1_129355331	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236059199					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:127386491 () rs orientation: forward

Symbol	Name	Function Class
Gm41947	predicted gene, 41947	within coordinates
Mgat5	mannoside acetylglucosaminyltransferase 5	within coordinates
Rr11973	regulatory region 11973	110 bp proximal
Rr19047	regulatory region 19047	1491 bp distal
Rr30263	regulatory region 30263	within coordinates
Rr396245	regulatory region 396245	263 bp upstream