rs236065722 SNP Detail

Summary

• ID
  rs236065722
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19059040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTACAGG CTTGTAAAAG
  AGGACCATGA GGAGAATAAG AATGAAGAAG AAACTGCAAT GAGATAGAAG AAGAGTATGC
  AGGAAGGAAC AAGAAGTAGC CATGGGATAA GGGTCAATAG AGCATGGTCC AAAGGACTGC
  CAAATTGGAG TTAAGAGCAG TCCAGATGGA CCATAGTTAA TTATAAGTAA TAACTCAATG
  T
  TATCAATAGG AAGTAGAAGG TAGGCATCTG CCCAGCATAG AAGGTAGGCA TATGCCCAGG
  TATTGTGCTA CATAAGGCTG TGAGTGTATA TTTCATCTTA GAACCTAATA ATCAAGGTGT
  GATATAAGCC ACAGGATGGG AAGTTTAAAT ATCTACTACT ACACTTTGGA GGTTTCATTT
  TGATTCCTGG TTTCTAGTGA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395552120	MGP_WTSI_16_19240383	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236065722					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395552120	MGP_WTSI_16_19240383	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19059040 () rs orientation: forward

Symbol	Name	Function Class
Gm35545	predicted gene, 35545	within coordinates
Gm56600	predicted gene, 56600	885 bp upstream
Iglv3	immunoglobulin lambda variable 3	918 bp downstream
Rr512770	regulatory region 512770	1306 bp proximal
Tssr137404	transcription start site region 137404	924 bp upstream
Tssr137405	transcription start site region 137405	984 bp upstream
Tssr140323	transcription start site region 140323	814 bp downstream
Tssr140324	transcription start site region 140324	1405 bp downstream
Tssr140325	transcription start site region 140325	1422 bp downstream
Tssr140326	transcription start site region 140326	1517 bp downstream