rs236077804 SNP Detail

Summary

• ID
  rs236077804
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69836206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCCAGG GTCTGGACAG
  AACACCGAGG CCACACTTTC TGAAGCACAG TTGATTCCCC ATGGGAGCCA TCCATGGCCT
  GCCTCATCCT GCAGTAGCAG CTGCATTGCC TCTGAGAAAT TCAGAGAAGC CTCTTTCCAG
  AATAAGAGGG AACACACTTT TGTCTTGTAA TGAACACCTT TGTCCAAGGA CCTAAGCTTA
  K
  ATTCCAACAC TCACAATAAA TGCTGCCCGA GGGCAGCTGT CCACCTGCAA TCCCAGTACT
  AGATCCTGGA GAGCACTGGC TAGCAATCCT AGTGAGACAC TGTATCCATA TACAAGGGGG
  AAAATGGTTG AAGAAGATGG CTAGTGTTAA CCTTTGGCTT CCAAATGCCA CACACACACA
  CACACACACA CACACACACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386395802	MGP_WTSI_12_70890419	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236077804					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386395802	MGP_WTSI_12_70890419	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69836206 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	912 bp upstream
Cdkl1	cyclin dependent kinase like 1	within coordinates
Cpgi4702	CpG island 4702	1040 bp proximal
Rr265514	regulatory region 265514	within coordinates
Tssr116527	transcription start site region 116527	823 bp downstream
Tssr116528	transcription start site region 116528	842 bp downstream
Tssr116529	transcription start site region 116529	849 bp downstream
Tssr116530	transcription start site region 116530	1173 bp downstream
Tssr116531	transcription start site region 116531	1228 bp downstream
Tssr116532	transcription start site region 116532	1797 bp downstream
Tssr116533	transcription start site region 116533	1862 bp downstream
Tssr116534	transcription start site region 116534	1879 bp downstream
Tssr116535	transcription start site region 116535	1893 bp downstream
Tssr116536	transcription start site region 116536	1921 bp downstream