rs236086340 SNP Detail

Summary

• ID
  rs236086340
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90171617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTATTAA ACCTTTTGTG
  TGCTTGGCTA TTTGGTACAT GGCTGGGGAC CTAAGGAGGT TTGGTGCCAT AGGTTCTTTT
  GTGTTGCATT TTTGTTTGTT TGTTTTTTGA CAGGATTTCT CTTACATAGG GCAGACTACC
  TAGAAGTCAC ACGTGCCCGT TGGCACCTTG GCTTCCTTAG TGCTAGGGCT ACGGGTGTGC
  R
  TTAATCCTCT CAGAACTTTT GTGCTTGTGC GGAAGCACCA TTCTCAGATT TAGGTCCCAA
  ACTGGATGTA TCCTAAAGCC TATACAGACT TCACCGAGGC AGCAGGAAGT CACCTTATGT
  GCCCTTGTTT GTTTAAGGCC CTGCCTGCTG CAGCATCAGG GGATGGGGCA CCGTGACTAG
  CCTGACAAGT TACTCTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358829448	MGP_WTSI_3_90068232	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236086340					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358829448	MGP_WTSI_3_90068232	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90171617 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13456	CpG island 13456	610 bp proximal
Crtc2	CREB regulated transcription coactivator 2	185 bp downstream
Dennd4b	DENN domain containing 4B	875 bp upstream
Gm65083	predicted gene, 65083	1673 bp downstream
Rr397807	regulatory region 397807	466 bp upstream
Rr580320	regulatory region 580320	385 bp proximal
Rr580321	regulatory region 580321	788 bp proximal
Rr580322	regulatory region 580322	886 bp proximal
Rr580323	regulatory region 580323	1086 bp proximal
Tssr30184	transcription start site region 30184	657 bp upstream
Tssr30185	transcription start site region 30185	1609 bp upstream
Tssr30186	transcription start site region 30186	1645 bp upstream
Tssr34202	transcription start site region 34202	1198 bp downstream