rs236095887 SNP Detail

Summary

• ID
  rs236095887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31148264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCGAGGT GGCAGCCGAA
  AGTGGTTATC TTCCTCCACC TCTTACCGTC TCTGGAAAAA TTAAAAAGAA AGAAAGAAAG
  AAAAAAACAC ACCCGAAAAC ACCAACCAAA GTGCTTAGTG AATCAGAATG GGTCACTTAT
  GGAGGCTAAG AGCAGCTGGG GCAGCAAGAT CTGTCCCCGC GGTGCGCAAA CCGCGGACTC
  Y
  GGGGCGATGG CGGCCGGGTC AGGCCACCCC AGAGCGGCCA GGCGGGGCTG CTCACCGGCA
  GCTGGCAGGG CGGCCGCGGC GGGAGGCCCC ACGGGGGCGA GAGGCCCCGC GACGTCGGCA
  CTGGGCGGGG GGAGGGTGGC AACACTGGGA GCGGGGAGCA CGGGGGCAGG TGGTGGCGCT
  GCGGGGGGGG GGGCGGTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357433252	MGP_WTSI_3_30993037	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236095887					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357433252	MGP_WTSI_3_30993037	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31148264 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	within coordinates
Gm65753	predicted gene, 65753	within coordinates
Gm65762	predicted gene, 65762	114 bp downstream
Rr397631	regulatory region 397631	298 bp downstream
Rr574879	regulatory region 574879	208 bp distal
Rr574880	regulatory region 574880	162 bp proximal
Rr574881	regulatory region 574881	453 bp proximal
Rr574882	regulatory region 574882	1021 bp proximal
Rr574883	regulatory region 574883	1052 bp proximal
Rr574884	regulatory region 574884	1716 bp proximal
Skil	SKI-like	995 bp upstream
Tssr28706	transcription start site region 28706	208 bp downstream
Tssr28707	transcription start site region 28707	65 bp downstream
Tssr28708	transcription start site region 28708	551 bp upstream
Tssr28709	transcription start site region 28709	579 bp upstream
Tssr28710	transcription start site region 28710	604 bp upstream
Tssr28711	transcription start site region 28711	822 bp upstream
Tssr28712	transcription start site region 28712	846 bp upstream
Tssr28713	transcription start site region 28713	937 bp upstream
Tssr28714	transcription start site region 28714	1782 bp upstream
Tssr32911	transcription start site region 32911	1712 bp downstream