rs236097545 SNP Detail

Summary

• ID
  rs236097545
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:121213220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAAACTG ATAGTTTAGG
  GTCTTTTAAA AATAGTTTTT ATTCGTTTCC CTGAAGTACA GCTAGAGCTT GTGAGGGGTC
  GGGAAGTTGG GCGGGGGCTG GGAGTGGGGT ATGTGTGTGA GCGGCGCCTG GTCCCTTCTC
  CTTCACCTAG CCCAAGAGTG CGGGCAGGTG ATGGATGCTA TGACCCTAGA CCCCCGAGTC
  M
  GGCCTGTGTG TCCTCGCCTC GCAGGCAGCC CCGGAAACAA AGGGCGGCAG CCTAGGGCTT
  GACGCGACCT CTGGGGTCAT GCGTAGCAGA GCGGCTAGAG GCCAGCAGCG GCGCCTTCCT
  GCTACTTGGG GCCCAGGCGC CCTCCACGGG ATCGCGCTCG TCTGGTCTGC TGCAGAGGGG
  GGCGCAGCAA GGATCAGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376271964	MGP_WTSI_8_123010381	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236097545					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376271964	MGP_WTSI_8_123010381	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121213220 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21144	CpG island 21144	within coordinates
Gm51556	predicted gene, 51556	796 bp downstream
Gm63872	predicted gene, 63872	1199 bp upstream
Gse1	genetic suppressor element 1, coiled-coil protein	Intron
Rr401178	regulatory region 401178	422 bp upstream
Rr671531	regulatory region 671531	292 bp distal
Rr671532	regulatory region 671532	168 bp proximal
Rr671533	regulatory region 671533	221 bp proximal
Rr671534	regulatory region 671534	709 bp proximal
Rr671535	regulatory region 671535	1476 bp proximal
Rr671536	regulatory region 671536	1568 bp proximal
Rr671537	regulatory region 671537	1925 bp proximal
Tssr79753	transcription start site region 79753	667 bp upstream
Tssr79754	transcription start site region 79754	1133 bp upstream
Tssr79755	transcription start site region 79755	1171 bp upstream
Tssr79756	transcription start site region 79756	1698 bp upstream
Tssr79757	transcription start site region 79757	1725 bp upstream
Tssr79758	transcription start site region 79758	1751 bp upstream
Tssr79759	transcription start site region 79759	1935 bp upstream