rs236097580 SNP Detail

Summary

• ID
  rs236097580
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140427302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTTGCCA GCAGGGAAAC
  TGGAAGAACA AGCTCTGGGG AGCTGTAGGG AGAAAGCAAC CTCTCTGGGT ATGCCCACCA
  CAATCAACCC AGTCTCCAAC CCAAGCCTGC ACTCCCAAGA TCCCCAGTAG GCAGAAACCC
  CTGCCCCCCA GTTTCCCCAA ATCAGTGGCT TGTACTGGGC TAAAGCTAAG GAGAAACCTG
  M
  AACCTCACTG TGTCTACATT TGTCCCAGCC AACACAAAGA GTTAAAGAAC CTGGAGAGTA
  AGGAGGCCCC TGGAGAGGTC GGGTTGGTCT CTGCAAGAGG AGTTCCCTGG AGAGTGTGGG
  AGCTCCTTGG AGACTTGGGG ACTCCCTGAA GAGGTGGGAG TTCCTGGAGA CTCGTGTGGT
  TGCTGGAGAT GTGCATAGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373420000	MGP_WTSI_7_148033288	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236097580					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373420000	MGP_WTSI_7_148033288	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140427302 () rs orientation: forward

Symbol	Name	Function Class
C330022C24Rik	RIKEN cDNA C330022C24 gene	1700 bp upstream
Cimap1a	ciliary microtubule associated protein 1A	527 bp upstream
Gm45785	predicted gene 45785	within coordinates
Rr657755	regulatory region 657755	1832 bp distal
Rr657756	regulatory region 657756	1971 bp distal
Rr657757	regulatory region 657757	1610 bp distal
Rr657758	regulatory region 657758	1436 bp distal
Rr657759	regulatory region 657759	526 bp proximal
Rr657760	regulatory region 657760	1990 bp proximal
Scgb1c1	secretoglobin, family 1C, member 1	620 bp downstream
Tssr69847	transcription start site region 69847	1822 bp downstream
Tssr69848	transcription start site region 69848	365 bp upstream
Tssr69849	transcription start site region 69849	381 bp upstream
Tssr69850	transcription start site region 69850	395 bp upstream
Tssr69851	transcription start site region 69851	412 bp upstream
Tssr69852	transcription start site region 69852	427 bp upstream
Tssr69853	transcription start site region 69853	454 bp upstream