rs236101604 SNP Detail

Summary

• ID
  rs236101604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34420435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTAGGGGT GGGGGGCACA
  TGGACTGGAG CGCGCTACTT TTGTTTGCTT GCTTTTCACG ACGGGTGTGC ACCCAAACCC
  ACCCTCCGTG GCAATACCCG CCGAGACTCG GTTCTTCCCG GGCAGAAAGG TGACGGGCAC
  GCGGGACAGC CCACCACCGA GCCCCGCTTT TGCAGGACAC CGCTTGCCAC CCCATTGCGG
  R
  TGCCCGAGTA CAGCGAAACC TCCCAGCCTC CCCCCGCCCC CCCCACTTCG GCCGCTATCG
  CTCTCTAGGC TTCCGGCCGC CCCTGTTCAG ACTCGCACAG CCGGCACCAG ACTGTTCTGG
  AATCGGGTCT GTTTACATCA CTCTACGGGG AGCCCCTTCC TGGAATACAG GACTACGTCC
  TGTTTATCTC TGCCATAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374215212	MGP_WTSI_8_35040879	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236101604					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374215212	MGP_WTSI_8_35040879	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34420435 () rs orientation: forward

Symbol	Name	Function Class
9530006C21Rik	RIKEN cDNA 9530006C21 gene	1638 bp upstream
Cpgi20240	CpG island 20240	within coordinates
Gm64370	predicted gene, 64370	934 bp upstream
Rbpms	RNA binding protein gene with multiple splicing	544 bp upstream
Rr661902	regulatory region 661902	613 bp distal
Rr661903	regulatory region 661903	54 bp distal
Rr661904	regulatory region 661904	444 bp proximal
Rr661905	regulatory region 661905	1343 bp proximal
Rr661906	regulatory region 661906	1421 bp proximal
Rr661907	regulatory region 661907	1748 bp proximal
Tssr80881	transcription start site region 80881	591 bp upstream
Tssr80882	transcription start site region 80882	430 bp upstream
Tssr80883	transcription start site region 80883	398 bp upstream