rs236102599 SNP Detail

Summary

• ID
  rs236102599
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69838332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCATAC CGAGCGTGAC
  GGCTGCCTGG CAAAGGGTAG AGGTATAATG AGTTACTAGA ATAGACTCGT GGTGGTCTGG
  GACCCTCCCC AGAAATCATG TGCAAATGTG AATGCCTACT CTTTTTGACT TTTGTCTTCT
  CGATAGCTTT GCCTTGCCCA GAATATCGCG TACATGGAAA CATACAGTGC ACAGCTTTTA
  W
  TGAGTCAGAT TCTCACTTCA CAGAATACAT CTGAGAGCCA CACACATCTT GCATTTAGCA
  GCAGTGTCTT CCTGTTTATT GCCGGGTAGC GTTCTGTTGT ATGAACGTAC TGACTGGTAT
  TTATTTGTTT ATTCAATCCT GGTTGAAGGA TATTTGGATT GTTTCCAGTG TGGGGTGATT
  ATACATGAAG CCGCTATAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324085703	CHEV_12_70892545	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236102599					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69838332 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	within coordinates
Cdkl1	cyclin dependent kinase like 1	291 bp upstream
Cpgi4702	CpG island 4702	158 bp distal
Rr257091	regulatory region 257091	269 bp proximal
Rr265514	regulatory region 265514	within coordinates
Tssr116527	transcription start site region 116527	1285 bp upstream
Tssr116528	transcription start site region 116528	1282 bp upstream
Tssr116529	transcription start site region 116529	1260 bp upstream
Tssr116530	transcription start site region 116530	927 bp upstream
Tssr116531	transcription start site region 116531	823 bp upstream
Tssr116532	transcription start site region 116532	265 bp upstream
Tssr116533	transcription start site region 116533	263 bp upstream
Tssr116534	transcription start site region 116534	235 bp upstream
Tssr116535	transcription start site region 116535	220 bp upstream
Tssr116536	transcription start site region 116536	194 bp upstream