rs236105031 SNP Detail

Summary

• ID
  rs236105031
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:91013158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGGCTCCC CGCCCGACCC
  CCGCCTCACT TTCTCAGCAG GCTCCACGCC CCCTCGCGCT CGCTCGCTCC TCCAGGGCCG
  CCTCAGAGAC CCTCTCCTCC CGGAGCCGCT TTTCCTCTCA GGCTCCGCGT TCCCCCTCAA
  AGCCCCACAC GGGGCTCCCG ACCGCGGGCG CTCAGCTACC TACTCTCGGA GGAGGCTGCC
  W
  GGCCCACCCG ACGTCTCCCG GCCGGCGGCG GGGCGCTCCT CGCTTCCTAG CCGGGCGCCG
  CGGCGAGCGG GCGCCAGTTC CGCGTCTGCA CCGGGGGGCG CGTACCACTC AGCCCCGAGG
  CGGGAGGAGG AGGCGGCGGA GGGGGCTGGG GCCGTACCAT TCGCCGCGCG GGGGACGGGG
  CTGCACCGAG CGGAGCCCGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354809288	MGP_WTSI_2_91022970	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236105031					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354809288	MGP_WTSI_2_91022970	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91013158 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11898	CpG island 11898			within coordinates
Gm74571	predicted gene, 74571			351 bp downstream
Madd	MAP-kinase activating death domain			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Nr1h3	nuclear receptor subfamily 1, group H, member 3			1248 bp downstream
Rr367225	regulatory region 367225			1075 bp upstream
Rr397125	regulatory region 397125			286 bp upstream
Rr560660	regulatory region 560660			614 bp distal
Rr560661	regulatory region 560661			within coordinates
Rr560662	regulatory region 560662			137 bp distal
Rr560663	regulatory region 560663			25 bp proximal
Rr560664	regulatory region 560664			84 bp proximal
Rr560665	regulatory region 560665			995 bp proximal
Tssr18868	transcription start site region 18868			601 bp downstream
Tssr25161	transcription start site region 25161			55 bp downstream
Tssr25162	transcription start site region 25162			128 bp downstream
Tssr25163	transcription start site region 25163			204 bp downstream
Tssr25164	transcription start site region 25164			1010 bp downstream
Tssr25165	transcription start site region 25165			1028 bp downstream
Tssr25166	transcription start site region 25166			1141 bp downstream
Tssr25167	transcription start site region 25167			1164 bp downstream