rs236105500 SNP Detail

Summary

• ID
  rs236105500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79230809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCCCTCC CCCAGTCTCC
  TCGCCAACGC CCCCTTCCCC TGTCCCCCTC CCGGCGGGCC GCGCGGGCCC CCGTCCCCAC
  CCCCGTGGGA ACGCTAGCTG CCCGCACTCC TCAGCCGCTC GGCTCGCCGC TGCCCTCACC
  TCCGCGCCGG CCGCCCGCCC GCCCTCAGGC GGGCCCCGGA CGCCGGCCCT CCACCGCCCC
  Y
  GGGTCGCCGG GAGGACATGG CCGCACACAG GCCGGTGGAA TGGGTCCAGG CCGTGGTCAG
  CCGCTTCGAC GAGCAGGTAA CGGGCCGCGG CGGGCAGGAG GTGGGAGCGG GTGGGGGTGG
  GGACGCGGTG GGTGAGGGGA GGAAGGAGCG GCTGCCTCTC GGGCTGCCGG GGGCTCCGCA
  GACCGAGGAA GGGCTGGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383977216	MGP_WTSI_11_79153485	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236105500					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383977216	MGP_WTSI_11_79153485	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79230809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3366	CpG island 3366	within coordinates
Gm57411	predicted gene, 57411	363 bp upstream
Gm73396	predicted gene, 73396	within coordinates
Gm73418	predicted gene, 73418	324 bp downstream
Nf1	neurofibromin 1	within coordinates
Rr247290	regulatory region 247290	within coordinates
Rr402772	regulatory region 402772	322 bp downstream
Tssr3597	transcription start site region 3597	343 bp downstream
Tssr103438	transcription start site region 103438	348 bp downstream
Tssr103439	transcription start site region 103439	290 bp downstream
Tssr103440	transcription start site region 103440	70 bp downstream
Tssr109477	transcription start site region 109477	684 bp upstream