rs236108303 SNP Detail

Summary

• ID
  rs236108303
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156037712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCAAGTA CTGGGATTAA
  AGGTGTACGC TGCCACCACC GCCCGGCTTT TTTTTTTGGG GGGGGGGGGC AAATGTTTTG
  CTTGGAGAGC TATGCTTTTG TGTGAAGAAT GACTTTTTTT TTTTTTTGAG ACAGGGTTTC
  TCTGTATAGC TCTGGCTGTG GTGGAACTCA CTCTGTAGAA CAGGCTGGCA CTACACGAAA
  A
  CAGTGAACAA TGACTTTAAT CTCAGTATGT CAGGGGCAGA AATGTGGATC ACTGTGAGTT
  CAAGACAAAC CTGTCTATAC ACTGATTTCC AGTCTAGCCA AGGCTACACA TATTGAAACT
  GTTTCAGAAA CAAACAAACA AACAAACAAA AACAGCATCA AGTGTGGTTA GATGAGCAAA
  GGCTTAGATT GACAAGTAGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	RF/J
ss356231068	MGP_WTSI_2_156021528	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	RF/J
rs236108303					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356231068	MGP_WTSI_2_156021528	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156037712 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12545	CpG island 12545	453 bp proximal
Gm75148	predicted gene, 75148	within coordinates
Phf20	PHD finger protein 20	855 bp upstream
Rr374121	regulatory region 374121	555 bp downstream
Rr397432	regulatory region 397432	667 bp upstream
Rr568208	regulatory region 568208	894 bp distal
Rr568209	regulatory region 568209	360 bp proximal
Rr568210	regulatory region 568210	901 bp proximal
Tssr21145	transcription start site region 21145	915 bp upstream
Tssr27045	transcription start site region 27045	731 bp downstream