rs236110447 SNP Detail

Summary

• ID
  rs236110447
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:45452015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agtgtccgg aactagacta aggacagtta
  agtcactagg tgggctttgg agagcaaacc tgggtcctct gcaatagcaa gcaccagtgc
  tcttgattgc tgagccagct cttcagcccc TTAAACTATT TTAAAAAGAT AAttaaaaaa
  W
  gatttattta tttataagta cactgtagct gtcttcagac acaccagaag agggcacgag
  gtctcattac agatggcgtg agccaccatg tggttgctgg gatttgaact caggaccttc
  ggaagagcat tcagtgcttt taaccactga                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323284503	CHEV_10_45295725	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236110447					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:45452015 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1519	CpG island 1519	1724 bp proximal
Gm3805	predicted gene 3805	1565 bp downstream
Hace1	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	1910 bp upstream
Rr224766	regulatory region 224766	1585 bp proximal
Tg(SRY-YFP,Tyr)TashTNpln	transgene insertion TashT, Nicolas Pilon	1910 bp proximal
Tssr93194	transcription start site region 93194	1892 bp upstream
Tssr93195	transcription start site region 93195	1997 bp upstream