rs236116408 SNP Detail

Summary

• ID
  rs236116408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165063530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATCTTCT ACAACACCTC
  CAAGAAACCT TCCAGACACA ACCACGATGC ATGTAGATAT TGAGTAAAAC TACACCTGAT
  GACTACTATA TAAAATTCAA ACTTCTTAGC AAGACAGAGA ACTCTCCAAT GACGAGGGAG
  GCAACACTCT GCCAGGGCGC CCCCCCCCCA AACTTTGTCA GGATACAGTT ATAGGCATCC
  Y
  CAAACACCTC AGATCTCAGT CTGAGTGCTG GCTTTACCCG GCCATCCAGT CTCCAGACTT
  GATCAAGATT CTGCCCAGGT GCACTGACCC TCGCGCGAAC ACACTAACGC GCACACACAC
  CTGTATACAT CTTCATCCTA ACCAACCACA CAATAATATA ACGGTCTCTC GTGAAACTAT
  GAATTCCTTG GGCCTTTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352237452	MGP_WTSI_1_167166092	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236116408					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352237452	MGP_WTSI_1_167166092	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165063530 () rs orientation: forward

Symbol	Name	Function Class
Cpgi949	CpG island 949	304 bp proximal
Gm38190	predicted gene, 38190	836 bp upstream
Rr372385	regulatory region 372385	405 bp upstream
Rr422343	regulatory region 422343	within coordinates
Rr422344	regulatory region 422344	560 bp proximal
Rr422345	regulatory region 422345	972 bp proximal
Rr422346	regulatory region 422346	978 bp proximal
Tiprl	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	within coordinates
Tssr9804	transcription start site region 9804	533 bp upstream
Tssr14765	transcription start site region 14765	931 bp downstream
Tssr14766	transcription start site region 14766	1019 bp downstream