rs236116756 SNP Detail

Summary

• ID
  rs236116756
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23735816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACTATTC CTTCCTTCTT
  CAGAAAAAAA GGAGCCCTAC ACCCCCTTCC CCCAGATATC TACATGCTTT GGCATACCAT
  GTTGCTCAAT AACTAGGCAC AGATTGGTGT TCTCTTTCAG AGGTCATGAA AGGCAGCCCA
  GAAGGGATAA AGTATCCCAG AGAAAGCAAT AGAGTAAGAA ATAGTACCTG GTATTGCTCT
  Y
  AGGAGTCCCA CATAAAGACC AGGTAAATGT GTAAATGTAC CATATTCTCT GTATCCATTC
  CTCTCTTGAG GGATATCTGG GTTCTTTCCA GCTTCTGACT ACTAAAAATA AGGCTGCTAT
  GAACAAAATG GAGCATGTTT CCTTATTACC AGTTGGAGCA TCTTCTGGGT ATATGCCCAG
  GATTCATATT GCTGGATCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	WSB/EiJ
ss397836712	MGP_WTSI_17_23653809	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	WSB/EiJ
rs236116756					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397836712	MGP_WTSI_17_23653809	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23735816 () rs orientation: forward

Symbol	Name	Function Class
Gm7898	predicted gene 7898	1058 bp downstream
Rr329666	regulatory region 329666	1016 bp distal