rs236122617 SNP Detail

Summary

• ID
  rs236122617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158225392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCCTCTTC TTCTTCTTCC TTCTCCTTCT CTTACTCCTC
  CTCCTTCTCC TCCTCCTCCT TCTTCTCCTT CTCCTCCTCC TTCTATTCCT CCTTCTCCTC
  Y
  TCCTCCTCCT CCTTCTCCTC CTCCTCCTCC TTCTCCTTCT TTTTAAAGAT TTATTTGTTA
  TTATGTGTAA GTACACTGTA GCTGTCTTCA GACACTCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320588883	CHEV_2_158209208	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236122617					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158225392 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21318	transcription start site region 21318	1298 bp downstream
Tssr21319	transcription start site region 21319	884 bp downstream
Tssr21320	transcription start site region 21320	848 bp downstream
Tssr21321	transcription start site region 21321	738 bp downstream
Tssr21322	transcription start site region 21322	615 bp downstream
Tssr21323	transcription start site region 21323	571 bp downstream
Tssr21324	transcription start site region 21324	533 bp downstream
Tssr21325	transcription start site region 21325	497 bp downstream
Tssr21326	transcription start site region 21326	473 bp downstream
Tssr21327	transcription start site region 21327	436 bp downstream
Tssr21328	transcription start site region 21328	390 bp downstream
Tssr21329	transcription start site region 21329	377 bp downstream
Tssr21330	transcription start site region 21330	288 bp downstream
Tssr21331	transcription start site region 21331	209 bp upstream
Tssr21332	transcription start site region 21332	346 bp upstream
Tssr21333	transcription start site region 21333	378 bp upstream
Tssr21334	transcription start site region 21334	1145 bp upstream
Tssr21335	transcription start site region 21335	1501 bp upstream
Tssr21336	transcription start site region 21336	1555 bp upstream
Tssr21337	transcription start site region 21337	1659 bp upstream
Tssr27228	transcription start site region 27228	254 bp upstream